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L3_114_000M1_scaffold_1195

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_1195_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..745
DNA (744bp) protein (248aa)
Repeat protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLG1_9FIRM
Repeat protein {ECO:0000313|EMBL:EFB76819.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_1195_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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924..2696
DNA (1773bp) protein (591aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLG2_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB76820.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type multidrug transport system, ATPase and permease components
L3_114_000M1_scaffold_1195_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2845..4161)
DNA (1317bp) protein (439aa)
Polysaccharide biosynthesis protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLG3_9FIRM
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EFB76821.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L3_114_000M1_scaffold_1195_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4346..5170
DNA (825bp) protein (275aa)
Nucleotide-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLG5_9FIRM
Nucleotide-binding protein {ECO:0000313|EMBL:EFB76823.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPases involved in chromosome partitioning
L3_114_000M1_scaffold_1195_5
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

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5210..5632
DNA (423bp) protein (141aa)
Large conductance mechanosensitive channel protein n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5D8H6_9FIRM
Large-conductance mechanosensitive channel {ECO:0000256|SAAS:SAAS00023935}; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
mscL; Large-conductance mechanosensitive channel
L3_114_000M1_scaffold_1195_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6221..10771
DNA (4551bp) protein (1517aa)
Glutamate synthase domain 2 (EC:1.4.1.13 1.4.1.14)
Class II glutamine amidotransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLG6_9FIRM
Class II glutamine amidotransferase {ECO:0000313|EMBL:EFB76824.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_1195_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10787..12259
DNA (1473bp) protein (491aa)
glutamate synthase (NADH) small subunit (EC:1.4.1.14 1.4.1.13)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLG7_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EFB76825.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_1195_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12541..13863)
DNA (1323bp) protein (441aa)
Alpha amylase, catalytic domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLJ6_9FIRM
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EFB76294.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosidases
L3_114_000M1_scaffold_1195_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13882..14421)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLJ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76295.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1195_10
unknown

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14706..14855
DNA (150bp) protein (50aa)

This feature has no annotations

L3_114_000M1_scaffold_1195_11
Oribacterium sp. oral taxon 078, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15097..16650
DNA (1554bp) protein (518aa)
integrase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C3735F
Integrase core domain protein {ECO:0000313|EMBL:EFE91227.1}; TaxID=608534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium sp. oral taxon 078 str. F0262.;"
integrase catalytic subunit
L3_114_000M1_scaffold_1195_12
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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16650..16847
DNA (198bp) protein (66aa)
IstB domain protein ATP-binding protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZJQ4_9FIRM
IstB domain protein ATP-binding protein {ECO:0000313|EMBL:CDD30682.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
L3_114_000M1_scaffold_1195_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17045..17167)
DNA (123bp) protein (41aa)
Transposase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H420_9FIRM
Transposase {ECO:0000313|EMBL:EEU97352.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
IS110, transposase
L3_114_000M1_scaffold_1195_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17171..17827)
DNA (657bp) protein (219aa)
Transposase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H420_9FIRM
Transposase {ECO:0000313|EMBL:EEU97352.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
IS110, transposase
Displaying 14 items

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