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L3_114_000M1_scaffold_1315

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_1315_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..830)
DNA (828bp) protein (276aa)
ATP synthase F0, A subunit {ECO:0000313|EMBL:EFB75624.1}; EC=3.6.3.14 {ECO:0000313|EMBL:EFB75624.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
atpB; F0 sector of membrane-bound ATP synthase, subunit a (EC:3.6.3.14)
ATP synthase F0, A subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM39_9FIRM
L3_114_000M1_scaffold_1315_2

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comp(827..1261)
DNA (435bp) protein (145aa)
ATPase, F0 complex, subunit I {ECO:0000313|EMBL:EKC57048.1}; EC=3.6.3.14 {ECO:0000313|EMBL:EKC57048.1};; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
ATPase, F0 complex, subunit I n=1 Tax=human gut metagenome RepID=K1SHM0_9ZZZZ
L3_114_000M1_scaffold_1315_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1278..1550)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM41_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75626.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_1315_4
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1655..1993)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9JG63_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS30127.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
L3_114_000M1_scaffold_1315_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2090..2767)
DNA (678bp) protein (226aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM43_9FIRM
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
conserved hypothetical integral membrane protein TIGR00023
L3_114_000M1_scaffold_1315_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2771..4114)
DNA (1344bp) protein (448aa)
GTPase Der n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM44_9FIRM
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribosome-associated GTPase EngA
L3_114_000M1_scaffold_1315_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4141..5472)
DNA (1332bp) protein (444aa)
Putative FeS-containing Cyanobacterial-specific oxidoreductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM45_9FIRM
Putative FeS-containing Cyanobacterial-specific oxidoreductase {ECO:0000313|EMBL:EFB75630.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Fe-S oxidoreductase, related to NifB/MoaA family
L3_114_000M1_scaffold_1315_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5544..5729)
DNA (186bp) protein (62aa)
50S ribosomal protein L32 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM46_9FIRM
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1315_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5754..6254)
DNA (501bp) protein (167aa)
Putative ACR, COG1399 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM47_9FIRM
Putative ACR, COG1399 {ECO:0000313|EMBL:EFB75632.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted metal-binding, possibly nucleic acid-binding protein
L3_114_000M1_scaffold_1315_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6414..6818)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75634.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1315_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6867..8201)
DNA (1335bp) protein (445aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM50_9FIRM
L3_114_000M1_scaffold_1315_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8312..9487)
DNA (1176bp) protein (392aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM51_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EFB75636.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_1315_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9627..10925
DNA (1299bp) protein (433aa)
MiaB-like tRNA modifying enzyme (EC:1.3.1.74)
tRNA methylthiotransferase YqeV n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM52_9FIRM
tRNA methylthiotransferase YqeV {ECO:0000313|EMBL:EFB75637.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_1315_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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11221..12744
DNA (1524bp) protein (508aa)
ferredoxin hydrogenase, large subunit (EC:1.12.7.2)
4Fe-4S binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM53_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EFB75638.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_1315_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12858..13343)
DNA (486bp) protein (162aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM54_9FIRM
hypothetical protein
L3_114_000M1_scaffold_1315_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13356..14144)
DNA (789bp) protein (263aa)
Metallo-beta-lactamase domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM55_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EFB75640.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Metal-dependent hydrolases of the beta-lactamase superfamily I
L3_114_000M1_scaffold_1315_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14206..15489)
DNA (1284bp) protein (428aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM56_9FIRM
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
L3_114_000M1_scaffold_1315_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15673..16785)
DNA (1113bp) protein (371aa)
Peptidase, M23 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM57_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:EFB75642.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
peptidase M23
Displaying 18 items

View Taxonomy