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L3_114_000M1_scaffold_1353

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_1353_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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312..1547
-----------------
DNA (1236bp)
protein (412aa)
aminopeptidase (EC:3.4.11.-)
Thermophilic metalloprotease (M29) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLP1_9FIRM
Thermophilic metalloprotease (M29) {ECO:0000313|EMBL:EFB76339.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_1353_2
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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1535..2689
-----------------
DNA (1155bp)
protein (385aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AQW5_9CLOT
Tax=BJP_IG2157_Clostridiales_52_13
L3_114_000M1_scaffold_1353_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3080..3577
-----------------
DNA (498bp)
protein (166aa)
Ribosome maturation factor RimP n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN8_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1353_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3775..4848
-----------------
DNA (1074bp)
protein (358aa)
Transcription termination factor NusA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN7_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcription termination factor NusA
L3_114_000M1_scaffold_1353_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5068..5376
-----------------
DNA (309bp)
protein (103aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76334.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted nucleic-acid-binding protein implicated in transcription termination
L3_114_000M1_scaffold_1353_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5369..5671
-----------------
DNA (303bp)
protein (101aa)
Ribosomal protein L7Ae n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN5_9FIRM
Ribosomal protein L7Ae {ECO:0000313|EMBL:EFB76333.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1353_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5690..8143
-----------------
DNA (2454bp)
protein (818aa)
Translation initiation factor IF-2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN4_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
bacterial translation initiation factor 2 (bIF-2)
L3_114_000M1_scaffold_1353_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8185..8526
-----------------
DNA (342bp)
protein (114aa)
Ribosome-binding factor A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN3_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribosome-binding factor A
L3_114_000M1_scaffold_1353_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8554..9537
-----------------
DNA (984bp)
protein (328aa)
DHHA1 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN2_9FIRM
DHHA1 domain protein {ECO:0000313|EMBL:EFB76330.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Exopolyphosphatase-related proteins
L3_114_000M1_scaffold_1353_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9721..10614
-----------------
DNA (894bp)
protein (298aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA pseudouridine 55 synthase (EC:5.4.99.12)
tRNA pseudouridine synthase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN1_9FIRM
L3_114_000M1_scaffold_1353_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10622..11557
-----------------
DNA (936bp)
protein (312aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN0_9FIRM
L3_114_000M1_scaffold_1353_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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11714..11986
-----------------
DNA (273bp)
protein (91aa)
30S ribosomal protein S15 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM9_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S15P
L3_114_000M1_scaffold_1353_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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12229..14388
-----------------
DNA (2160bp)
protein (720aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM8_9FIRM
L3_114_000M1_scaffold_1353_14
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14665..14844)
-----------------
DNA (180bp)
protein (60aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y726_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA20624.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
L3_114_000M1_scaffold_1353_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15011..16219)
-----------------
DNA (1209bp)
protein (403aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
acetate kinase (EC:2.7.2.1)
Acetate kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM7_9FIRM
Displaying 15 items

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