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L3_114_000M1_scaffold_1430

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_1430_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(869..1750)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76508.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_1430_2
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1737..3128)
DNA (1392bp) protein (464aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX53_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF40820.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
RND family transporter
L3_114_000M1_scaffold_1430_3
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3153..3989)
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX54_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66231.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_114_000M1_scaffold_1430_4
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3971..4813)
DNA (843bp) protein (281aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66232.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L3_114_000M1_scaffold_1430_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4871..7135)
DNA (2265bp) protein (755aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN38_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75973.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type sugar transport system, periplasmic component
L3_114_000M1_scaffold_1430_6
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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7274..7951
DNA (678bp) protein (226aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX57_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:KJF40822.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
transcriptional regulator
L3_114_000M1_scaffold_1430_7
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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7945..9234
DNA (1290bp) protein (430aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX58_9FIRM
integral membrane sensor signal transduction histidine kinase
L3_114_000M1_scaffold_1430_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10307..11482
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75120.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1430_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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11479..11748
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75121.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1430_10

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11735..13087
DNA (1353bp) protein (451aa)
Rlx protein (Fragment) n=1 Tax=human gut metagenome RepID=K1SP65_9ZZZZ
Rlx protein {ECO:0000313|EMBL:EKC62457.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_114_000M1_scaffold_1430_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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13100..14299
DNA (1200bp) protein (400aa)
Site-specific recombinase, phage integrase family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRY3_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EFB74511.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
integrase protein
L3_114_000M1_scaffold_1430_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14462..15637
DNA (1176bp) protein (392aa)
Site-specific recombinase, phage integrase family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRY2_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EFB74510.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
site-specific recombinase XerC
L3_114_000M1_scaffold_1430_13
unknown

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15634..15774
DNA (141bp) protein (47aa)

This feature has no annotations

Displaying 13 items

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