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L3_114_000M1_scaffold_1998

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_1998_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(40..705)
DNA (666bp) protein (222aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RNAse III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPW2_9FIRM
L3_114_000M1_scaffold_1998_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(842..1867)
DNA (1026bp) protein (342aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Phosphate acyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPW3_9FIRM
phosphate:acyl-[acyl carrier protein] acyltransferase
L3_114_000M1_scaffold_1998_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1864..3177)
DNA (1314bp) protein (438aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPW4_9FIRM
tRNA:m(5)U-54 methyltransferase
L3_114_000M1_scaffold_1998_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3302..5386)
DNA (2085bp) protein (695aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPW5_9FIRM
L3_114_000M1_scaffold_1998_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5577..6677)
DNA (1101bp) protein (367aa)
DNA protecting protein DprA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPW6_9FIRM
DNA protecting protein DprA {ECO:0000313|EMBL:EFB75312.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA protecting protein DprA
L3_114_000M1_scaffold_1998_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6716..7483)
DNA (768bp) protein (256aa)
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EFB75313.1}; EC=2.1.1.- {ECO:0000313|EMBL:EFB75313.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RNA methyltransferase, TrmH family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPW7_9FIRM
rRNA methylases
L3_114_000M1_scaffold_1998_7

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comp(7761..8114)
DNA (354bp) protein (118aa)
Ribosomal protein L20, bacterial-type n=1 Tax=human gut metagenome RepID=K1S811_9ZZZZ
Ribosomal protein L20, bacterial-type {ECO:0000313|EMBL:EKC56772.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
LSU ribosomal protein L20P
L3_114_000M1_scaffold_1998_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8172..8378)
DNA (207bp) protein (69aa)
50S ribosomal protein L35 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPX2_9FIRM
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L35P
L3_114_000M1_scaffold_1998_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8408..9007)
DNA (600bp) protein (200aa)
Translation initiation factor IF-3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPX3_9FIRM
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
infC; Translation initiation factor IF-3
L3_114_000M1_scaffold_1998_10
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9572..10489)
DNA (918bp) protein (306aa)
Transposase n=2 Tax=Dorea longicatena DSM 13814 RepID=A6BEZ9_9FIRM
Transposase {ECO:0000313|EMBL:EDM63586.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Transposase and inactivated derivatives
L3_114_000M1_scaffold_1998_11
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10915..11331)
DNA (417bp) protein (139aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WLM6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX77961.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
L3_114_000M1_scaffold_1998_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11508..11828
DNA (321bp) protein (107aa)
DNA-binding helix-turn-helix protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DNV8_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CCX81893.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
transcriptional regulator
Displaying 12 items

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