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L3_114_000M1_scaffold_2086

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_2086_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..672
DNA (672bp) protein (224aa)
Polysaccharide biosynthesis protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLW6_9FIRM
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EFB76414.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
polysaccharide biosynthesis protein CapD
L3_114_000M1_scaffold_2086_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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676..1302
DNA (627bp) protein (209aa)
Bacterial sugar transferase {ECO:0000313|EMBL:EFB76413.1}; EC=2.4.1.- {ECO:0000313|EMBL:EFB76413.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Bacterial sugar transferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLW5_9FIRM
sugar transferase
L3_114_000M1_scaffold_2086_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1551..2636
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLW4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76412.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcriptional regulator, CdaR family
L3_114_000M1_scaffold_2086_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2801..3559
DNA (759bp) protein (253aa)
Cell division ATP-binding protein FtsE n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW8_9FIRM
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:EFB75903.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
cell division ATP-binding protein FtsE
L3_114_000M1_scaffold_2086_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3582..4502
DNA (921bp) protein (307aa)
Cell division protein FtsX n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW7_9FIRM
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Cell division protein
L3_114_000M1_scaffold_2086_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4530..5744
DNA (1215bp) protein (405aa)
Peptidase, M23 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW6_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:EFB75901.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Membrane proteins related to metalloendopeptidases
L3_114_000M1_scaffold_2086_7
unknown

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5761..5874
DNA (114bp) protein (38aa)

This feature has no annotations

L3_114_000M1_scaffold_2086_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5904..7121
DNA (1218bp) protein (406aa)
Peptidase, S41 family {ECO:0000313|EMBL:EFB75900.1}; EC=3.4.21.- {ECO:0000313|EMBL:EFB75900.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Periplasmic protease (EC:3.4.21.102)
Peptidase, S41 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW5_9FIRM
L3_114_000M1_scaffold_2086_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7151..8014
DNA (864bp) protein (288aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW4_9FIRM
L3_114_000M1_scaffold_2086_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8428..9441)
DNA (1014bp) protein (338aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
aspartate-ammonia ligase (EC:6.3.1.1)
Aspartate--ammonia ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW3_9FIRM
L3_114_000M1_scaffold_2086_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9477..11234)
DNA (1758bp) protein (586aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW2_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB75897.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type multidrug transport system, ATPase and permease components
L3_114_000M1_scaffold_2086_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11231..12088)
DNA (858bp) protein (286aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB75896.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type multidrug transport system, ATPase and permease components
Displaying 12 items

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