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L3_114_000M1_scaffold_2441

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_2441_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..354
DNA (354bp) protein (118aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.157 1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ74_9FIRM
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein {ECO:0000313|EMBL:EFB77234.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_2441_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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453..1622
DNA (1170bp) protein (390aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1)
Acyl-CoA dehydrogenase, C-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ75_9FIRM
Acyl-CoA dehydrogenase, C-terminal domain protein {ECO:0000313|EMBL:EFB77235.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_2441_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1637..2422
DNA (786bp) protein (262aa)
Electron transfer flavoprotein domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ76_9FIRM
Electron transfer flavoprotein domain protein {ECO:0000313|EMBL:EFB77236.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Electron transfer flavoprotein, beta subunit
L3_114_000M1_scaffold_2441_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2440..3540
DNA (1101bp) protein (367aa)
Electron transfer flavoprotein FAD-binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ77_9FIRM
Electron transfer flavoprotein FAD-binding domain protein {ECO:0000313|EMBL:EFB77237.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
electron transfer protein subunit alpha
L3_114_000M1_scaffold_2441_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3606..4283)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77238.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_2441_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4280..4861)
DNA (582bp) protein (194aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ79_9FIRM
putative 5-formyltetrahydrofolate cyclo-ligase family protein
L3_114_000M1_scaffold_2441_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5023..5589
DNA (567bp) protein (189aa)
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:EFB77241.1}; EC=5.1.3.13 {ECO:0000313|EMBL:EFB77241.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ81_9FIRM
L3_114_000M1_scaffold_2441_8
Treponema succinifaciens, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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5901..7079
DNA (1179bp) protein (393aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=869209 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema succinifaciens (strain ATCC 33096 / DSM 2489 / 6091).;"
Cytosine-specific methyltransferase n=1 Tax=Treponema succinifaciens (strain ATCC 33096 / DSM 2489 / 6091) RepID=F2NVE1_TRES6
DNA-cytosine methyltransferase
L3_114_000M1_scaffold_2441_9
Geobacillus stearothermophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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7072..7947
DNA (876bp) protein (292aa)
BsaWI endonuclease n=1 Tax=Geobacillus stearothermophilus RepID=Q6UQ65_GEOSE
BsaWI endonuclease {ECO:0000313|EMBL:AAQ72362.1}; TaxID=1422 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus stearothermophilus (Bacillus stearothermophilus).;"
hypothetical protein
L3_114_000M1_scaffold_2441_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8062..8859
DNA (798bp) protein (266aa)
ABC-2 type transporter n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ82_9FIRM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type polysaccharide/polyol phosphate export systems, permease component
L3_114_000M1_scaffold_2441_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8872..9648
DNA (777bp) protein (259aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ83_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB77243.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type polysaccharide/polyol phosphate transport system, ATPase component
L3_114_000M1_scaffold_2441_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9652..10716
DNA (1065bp) protein (355aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB77244.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB77244.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ84_9FIRM
Predicted glycosyltransferases
Displaying 12 items

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