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L3_114_000M1_scaffold_2659

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_2659_1
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(8..418)
DNA (411bp) protein (137aa)
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KNE1_9FIRM
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
RNA polymerase sigma24 factor {ECO:0000313|EMBL:AIZ14701.1}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L3_114_000M1_scaffold_2659_2
unknown

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628..732
DNA (105bp) protein (35aa)

This feature has no annotations

L3_114_000M1_scaffold_2659_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1122..1379)
DNA (258bp) protein (86aa)
YgiT-type zinc finger domain-containing protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZFJ8_BIFBR
YgiT-type zinc finger domain-containing protein {ECO:0000313|EMBL:EPD75131.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L3_114_000M1_scaffold_2659_4
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1415..2059)
DNA (645bp) protein (215aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WV35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX70738.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
L3_114_000M1_scaffold_2659_5
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2056..2916)
DNA (861bp) protein (287aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Clostridium termitidis CT1112 RepID=S0FJU2_9CLOT
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:EMS72067.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
multidrug ABC transporter ATPase
L3_114_000M1_scaffold_2659_6
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2909..3289)
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WV38_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX70741.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
putative transcriptional regulator
L3_114_000M1_scaffold_2659_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3467..3829
DNA (363bp) protein (121aa)
DNA-binding helix-turn-helix protein n=2 Tax=Clostridiales RepID=A8SHB5_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDP20515.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Helix-turn-helix.
L3_114_000M1_scaffold_2659_8
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4029..5375)
DNA (1347bp) protein (449aa)
Relaxase/mobilization nuclease family protein n=2 Tax=root RepID=G2T375_ROSHA
Relaxase/mobilization nuclease family protein
Relaxase/mobilization nuclease family protein {ECO:0000313|EMBL:AEN97169.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_114_000M1_scaffold_2659_9
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5534..5881)
DNA (348bp) protein (116aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=C9L7J7_BLAHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK98092.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_114_000M1_scaffold_2659_10
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5878..6042)
DNA (165bp) protein (55aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=U2R6I8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL41032.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_114_000M1_scaffold_2659_11
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6055..6639)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L7J5_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:EEX21913.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
hypothetical protein
L3_114_000M1_scaffold_2659_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6653..7612)
DNA (960bp) protein (320aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3K2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK98095.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_114_000M1_scaffold_2659_13
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8323..9072)
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T382_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN97176.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_114_000M1_scaffold_2659_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9075..9326)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QSU6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK98098.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_114_000M1_scaffold_2659_15
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9341..9925)
DNA (585bp) protein (195aa)
NlpC/P60 family protein (Fragment) n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PCE1_9FIRM
NlpC/P60 family protein {ECO:0000313|EMBL:ERK41821.1}; Flags: Fragment;; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Cell wall-associated hydrolases (invasion-associated proteins)
L3_114_000M1_scaffold_2659_16
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9879..10952)
DNA (1074bp) protein (358aa)
Cell wall-associated hydrolases (Invasion-associated proteins) n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GT85_9FIRM
Cell wall-associated hydrolases (invasion-associated proteins)
NLP/P60 protein {ECO:0000313|EMBL:AEN97178.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_114_000M1_scaffold_2659_17
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10933..13293)
DNA (2361bp) protein (787aa)
Uncharacterized protein n=4 Tax=root RepID=C9L7I8_BLAHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN97179.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_114_000M1_scaffold_2659_18

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comp(13250..13639)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1TMW8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC60691.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_114_000M1_scaffold_2659_19
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13643..14098)
DNA (456bp) protein (152aa)
Transcriptional activator, adenine-specific DNA methyltransferase n=2 Tax=Clostridiales RepID=D7GT83_9FIRM
Transcriptional activator, adenine-specific DNA methyltransferase
MT-A70 {ECO:0000313|EMBL:EEX21991.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
L3_114_000M1_scaffold_2659_20
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14215..15699)
DNA (1485bp) protein (495aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
DNA modification methylase (EC:2.1.1.72)
DNA (Cytosine-5-)-methyltransferase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L7I5_BLAHA
L3_114_000M1_scaffold_2659_21
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15715..16581)
DNA (867bp) protein (289aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T390_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN97184.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
Displaying 21 items

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