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L3_114_000M1_scaffold_563

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_563_1
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2..154
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q2G3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ22985.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L3_114_000M1_scaffold_563_2
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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223..1116
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:274 RepID=R6PK03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC21194.1}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
diguanylate cyclase (GGDEF) domain
L3_114_000M1_scaffold_563_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1213..1494
DNA (282bp) protein (94aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DDV8_CLODI
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein {ECO:0000313|EMBL:EQF25723.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
signal transduction histidine kinase
L3_114_000M1_scaffold_563_4
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1511..2278
DNA (768bp) protein (256aa)
Response regulator receiver domain protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5U0_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:EEG72474.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
L3_114_000M1_scaffold_563_5
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

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2523..5429
DNA (2907bp) protein (969aa)
GLUG domain protein n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6C0Q0_9FIRM
GLUG domain protein {ECO:0000313|EMBL:CDA65021.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
Bacterial Ig-like domain (group 2).
L3_114_000M1_scaffold_563_6
unknown

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5466..5648
DNA (183bp) protein (61aa)

This feature has no annotations

L3_114_000M1_scaffold_563_7
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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5742..7925
DNA (2184bp) protein (728aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
Primosomal protein N n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q3H6_9FIRM
helicase PriA essential for oriC/DnaA-independent DNA replication
L3_114_000M1_scaffold_563_8
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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7928..9178
DNA (1251bp) protein (417aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QME6_9FIRM
16S rRNA methyltransferase
L3_114_000M1_scaffold_563_9
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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9182..10204
DNA (1023bp) protein (341aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QQR8_9FIRM
rlmN; ribosomal RNA large subunit methyltransferase RlmN
L3_114_000M1_scaffold_563_10
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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10204..10935
DNA (732bp) protein (244aa)
prpC1; phosphorylated protein phosphatase (EC:3.1.3.16)
Protein phosphatase 2C n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C029_9FIRM
Protein phosphatase 2C {ECO:0000313|EMBL:EDS75519.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
L3_114_000M1_scaffold_563_11
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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10939..12840
DNA (1902bp) protein (634aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QAJ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ23369.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
serine/threonine protein kinase
L3_114_000M1_scaffold_563_12
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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12830..13717
DNA (888bp) protein (296aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
rsgA; Putative ribosome biogenesis GTPase RsgA (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=5 Tax=Erysipelotrichaceae RepID=B0N7I8_9FIRM
L3_114_000M1_scaffold_563_13
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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13710..14360
DNA (651bp) protein (217aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
rpe; Ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QMF0_9FIRM
L3_114_000M1_scaffold_563_14
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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14357..14956
DNA (600bp) protein (200aa)
Thiamine diphosphokinase {ECO:0000313|EMBL:EDS75523.1}; EC=2.7.6.2 {ECO:0000313|EMBL:EDS75523.1};; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
Thiamin pyrophosphokinase (EC:2.7.6.2)
Thiamine diphosphokinase n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C033_9FIRM
L3_114_000M1_scaffold_563_15
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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15089..15535
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LJ27_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET59347.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
hypothetical protein
L3_114_000M1_scaffold_563_16
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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15709..16602
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. D7 RepID=C3RI81_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ34909.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
SIS (Sugar ISomerase) domain containing transcriptional regulator
L3_114_000M1_scaffold_563_17
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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16716..18122
DNA (1407bp) protein (469aa)
bglA6; 6-phospho-beta-glucosidase (EC:3.2.1.86)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QAK1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ23374.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L3_114_000M1_scaffold_563_18
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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18132..19418
DNA (1287bp) protein (429aa)
celB; PTS system, cellobiose-specific IIC component (EC:2.7.1.69)
PTS system lactose/cellobiose family IIC component n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q3I6_9FIRM
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L3_114_000M1_scaffold_563_19
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19450..20565
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2AI20_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ27681.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
peptidase M20
L3_114_000M1_scaffold_563_20
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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20567..21463
DNA (897bp) protein (299aa)
Uncharacterized protein n=2 Tax=Coprobacillus RepID=C3RI85_9FIRM
Auxin efflux carrier {ECO:0000313|EMBL:CCZ34901.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
putative auxin efflux carrier
L3_114_000M1_scaffold_563_21
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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21451..22311
DNA (861bp) protein (287aa)
Membrane protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G8D2_9FIRM
Membrane protein {ECO:0000313|EMBL:EFW05749.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
hypothetical protein
L3_114_000M1_scaffold_563_22
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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22467..23057
DNA (591bp) protein (197aa)
Rubredoxin n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q8C3_9FIRM
Rubredoxin {ECO:0000313|EMBL:CCZ24823.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
Rubrerythrin
L3_114_000M1_scaffold_563_23
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

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23564..24238
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XJS2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA15080.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
hypothetical protein
L3_114_000M1_scaffold_563_24
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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24774..24968
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QBN1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ23734.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L3_114_000M1_scaffold_563_25
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(24924..25058)
DNA (135bp) protein (45aa)
Integrase core domain protein n=2 Tax=Clostridium spiroforme DSM 1552 RepID=B1BZ69_9FIRM
Integrase core domain protein {ECO:0000313|EMBL:EDS75716.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
hypothetical protein
L3_114_000M1_scaffold_563_26
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(25264..25494)
DNA (231bp) protein (77aa)
Transposase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q4L6_9FIRM
Transposase {ECO:0000313|EMBL:CCZ23735.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
IS3 family transposase
L3_114_000M1_scaffold_563_27
Peptostreptococcus sp. MV1, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25768..26412
DNA (645bp) protein (215aa)
AhpC/TSA family protein n=25 Tax=Clostridium difficile RepID=T2WAF5_CLODI
Oxidoreductase {ECO:0000313|EMBL:KGF15269.1}; TaxID=1219626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus.;" source="Peptostreptococcus sp. MV1.;"
hypothetical protein
L3_114_000M1_scaffold_563_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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26841..27068
DNA (228bp) protein (76aa)
4Fe-4S binding domain protein n=25 Tax=Clostridium difficile RepID=T2WBF3_CLODI
putative iron-sulfur binding proteinTn1549-like,CTn5-Orf32
4Fe-4S binding domain protein {ECO:0000313|EMBL:EEA83007.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_114_000M1_scaffold_563_29
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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27242..28504
DNA (1263bp) protein (421aa)
ABC-type transport system, permease Tn1549-like, CTn5-Orf33 n=25 Tax=Clostridium difficile RepID=U4CMG2_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHM92842.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
vexP1; ABC transporter permease
Displaying 29 items

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