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L3_114_000M1_scaffold_962

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_962_1
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1..1206)
DNA (1206bp) protein (402aa)
ABC-type oligopeptide transport system periplasmic component n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q642_9FIRM
ABC-type oligopeptide transport system periplasmic component {ECO:0000313|EMBL:CCZ24230.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
ABC-type oligopeptide transport system, periplasmic component
L3_114_000M1_scaffold_962_2
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1420..3114)
DNA (1695bp) protein (565aa)
ABC-type oligopeptide transport system periplasmic component n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q642_9FIRM
ABC-type oligopeptide transport system periplasmic component {ECO:0000313|EMBL:CCZ24230.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
ABC-type oligopeptide transport system, periplasmic component
L3_114_000M1_scaffold_962_3
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(3165..4040)
DNA (876bp) protein (292aa)
fructokinase (EC:2.7.1.4)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QPU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ24231.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L3_114_000M1_scaffold_962_4
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(4172..4954)
DNA (783bp) protein (261aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
Pyruvate formate-lyase activating enzyme n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QTA3_9FIRM
pyruvate formate-lyase activating enzyme
L3_114_000M1_scaffold_962_5
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(4990..7254)
DNA (2265bp) protein (755aa)
formate acetyltransferase 1 (EC:2.3.1.54)
Formate acetyltransferase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q6Q6_9FIRM
Formate acetyltransferase {ECO:0000313|EMBL:CCZ24233.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L3_114_000M1_scaffold_962_6
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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7491..8180
DNA (690bp) protein (230aa)
transcriptional antiterminator BglG (EC:2.7.1.69)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QD18_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ24234.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L3_114_000M1_scaffold_962_7
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8341..8982)
DNA (642bp) protein (214aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
Deoxyribose-phosphate aldolase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QTA8_9FIRM
deoxyribose-phosphate aldolase
L3_114_000M1_scaffold_962_8
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8960..10426)
DNA (1467bp) protein (489aa)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00085409}; EC=6.3.2.- {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00276926};; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13)
UDP-N-acetylmuramyl-tripeptide synthetase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q6R1_9FIRM
L3_114_000M1_scaffold_962_9
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(10426..11706)
DNA (1281bp) protein (427aa)
tRNA methylthiotransferase YqeV n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QD23_9FIRM
tRNA methylthiotransferase YqeV {ECO:0000313|EMBL:CCZ24239.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
MiaB family RNA modification protein
L3_114_000M1_scaffold_962_10
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(11715..12467)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q651_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ24240.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L3_114_000M1_scaffold_962_11
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(12464..13204)
DNA (741bp) protein (247aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QPV6_9FIRM
hypothetical protein
L3_114_000M1_scaffold_962_12
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(13387..15954)
DNA (2568bp) protein (856aa)
Putative ATP-dependent chaperone protein ClpB n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QTB3_9FIRM
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
clpC; Class III stress response-related ATPase
L3_114_000M1_scaffold_962_13
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(16231..16431)
DNA (201bp) protein (67aa)
Putative hydrocarbon binding protein (Contains V4R domain) n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q6R6_9FIRM
Putative hydrocarbon binding protein (Contains V4R domain) {ECO:0000313|EMBL:CCZ24243.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
putative hydrocarbon binding protein (contains V4R domain)
L3_114_000M1_scaffold_962_14
unknown

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comp(16447..16566)
DNA (120bp) protein (40aa)

This feature has no annotations

L3_114_000M1_scaffold_962_15
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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16728..17891
DNA (1164bp) protein (388aa)
Metallo-beta-lactamase domain protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QD28_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:CCZ24244.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
conserved hypothetical protein
L3_114_000M1_scaffold_962_16
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(17916..18329)
DNA (414bp) protein (138aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
Peptide deformylase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q655_9FIRM
N-formylmethionyl-tRNA deformylase
L3_114_000M1_scaffold_962_17
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(18332..18853)
DNA (522bp) protein (174aa)
putative NADH dehydrogenase/NAD(P)H nitroreductase (EC:1.-.-.-)
Nitroreductase family protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QPW0_9FIRM
Nitroreductase family protein {ECO:0000313|EMBL:CCZ24246.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L3_114_000M1_scaffold_962_18
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(18853..19140)
DNA (288bp) protein (96aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QTB5_9FIRM
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:CCZ24247.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
hypothetical protein
L3_114_000M1_scaffold_962_19
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(19227..20093)
DNA (867bp) protein (289aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
shikimate dehydrogenase (EC:1.1.1.282)
Shikimate dehydrogenase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q6R9_9FIRM
Displaying 19 items

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