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L3_114_000M1_scaffold_549

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_549_1
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(107..1447)
DNA (1341bp) protein (447aa)
Putative efflux protein, MATE family n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZB6_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL27126.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_114_000M1_scaffold_549_2
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1434..1721)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=T5LW30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQM98762.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Nitroreductase
L3_114_000M1_scaffold_549_3
unknown

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comp(1880..1996)
DNA (117bp) protein (39aa)

This feature has no annotations

L3_114_000M1_scaffold_549_4
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2208..2666)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQM7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79992.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
transcriptional regulator, AsnC family
L3_114_000M1_scaffold_549_5
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2885..4228
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPW5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79991.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_114_000M1_scaffold_549_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4664..5479
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPW1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79986.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L3_114_000M1_scaffold_549_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5469..7646
DNA (2178bp) protein (726aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CP08_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79984.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Signal transduction histidine kinase
L3_114_000M1_scaffold_549_8
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7646..9496
DNA (1851bp) protein (617aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQL9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79982.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ABC-type sugar transport system, periplasmic component
L3_114_000M1_scaffold_549_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9502..12450
DNA (2949bp) protein (983aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=T5LVC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQM98759.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Signal transduction histidine kinase
L3_114_000M1_scaffold_549_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12518..13405
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CR97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79978.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted membrane protein
L3_114_000M1_scaffold_549_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13431..15320
DNA (1890bp) protein (630aa)
ATP-dependent DNA helicase, RecQ-like (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79977.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_114_000M1_scaffold_549_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15341..16510
DNA (1170bp) protein (390aa)
Amidohydrolase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPU8_9FIRM
Amidohydrolase {ECO:0000313|EMBL:CDD79976.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
amidohydrolase
L3_114_000M1_scaffold_549_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16704..18494
DNA (1791bp) protein (597aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JF80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79975.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Uncharacterized flavoproteins
L3_114_000M1_scaffold_549_14
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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18829..19551
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6VLZ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC93206.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)
L3_114_000M1_scaffold_549_15
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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19569..21260
DNA (1692bp) protein (564aa)
CRISPR-associated CXXC_CXXC protein Cst1 n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6WG86_9FIRM
CRISPR-associated CXXC_CXXC protein Cst1 {ECO:0000313|EMBL:CDC93207.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
CRISPR-associated CXXC_CXXC protein Cst1
L3_114_000M1_scaffold_549_16
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21263..22138
DNA (876bp) protein (292aa)
CRISPR-associated autoregulator, Cst2 family n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LL15_9FIRM
CRISPR-associated autoregulator, Cst2 family
CRISPR-associated autoregulator, Cst2 family {ECO:0000313|EMBL:CBL20526.1}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L3_114_000M1_scaffold_549_17
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

Not on your lists

22122..22856
DNA (735bp) protein (245aa)
CRISPR-associated protein Cas5 Tneap subtype n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6VG67_9FIRM
CRISPR-associated protein Cas5 Tneap subtype {ECO:0000313|EMBL:CDC93209.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
CRISPR-associated protein Cas5, Tneap subtype
L3_114_000M1_scaffold_549_18
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

Not on your lists

22927..25323
DNA (2397bp) protein (799aa)
CRISPR-associated helicase Cas3 domain protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6V7Y4_9FIRM
CRISPR-associated helicase Cas3 domain protein {ECO:0000313|EMBL:CDC93210.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
CRISPR-associated helicase Cas3
L3_114_000M1_scaffold_549_19
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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25339..25833
DNA (495bp) protein (165aa)
CRISPR-associated protein Cas4 n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MFZ5_9FIRM
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:EDR97015.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
CRISPR-associated exonuclease, Cas4 family
L3_114_000M1_scaffold_549_20
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25871..26863
DNA (993bp) protein (331aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LL11_9FIRM
CRISPR-associated protein, Cas1 family
L3_114_000M1_scaffold_549_21
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26867..27145
DNA (279bp) protein (93aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LL10_9FIRM
CRISPR-associated protein, Cas2 family
L3_114_000M1_scaffold_549_22
unknown

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27216..27305
DNA (90bp) protein (30aa)

This feature has no annotations

L3_114_000M1_scaffold_549_23
unknown

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27959..28159
DNA (201bp) protein (67aa)

This feature has no annotations

Displaying 23 items

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