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L3_114_000M1_scaffold_638

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_638_1
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..438
DNA (438bp) protein (146aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
NAD-dependent protein deacetylases, SIR2 family (EC:3.5.1.-)
NAD-dependent protein deacetylase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CDJ7_9FIRM
L3_114_000M1_scaffold_638_2
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

499..690
DNA (192bp) protein (64aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JH25_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75652.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_114_000M1_scaffold_638_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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801..1088
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=2 Tax=Ruminococcus RepID=C6JH26_9FIRM
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
SSU ribosomal protein S6P
L3_114_000M1_scaffold_638_4
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1168..1629
DNA (462bp) protein (154aa)
Single-stranded DNA-binding protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CDZ3_9FIRM
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
single-strand binding protein
L3_114_000M1_scaffold_638_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1666..1929
DNA (264bp) protein (88aa)
30S ribosomal protein S18 n=2 Tax=Ruminococcus RepID=C6JH28_9FIRM
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
SSU ribosomal protein S18P
L3_114_000M1_scaffold_638_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2335..4386
DNA (2052bp) protein (684aa)
Phosphoesterase domain-containing protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CDY7_9FIRM
Phosphoesterase domain-containing protein {ECO:0000313|EMBL:CDD76160.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L3_114_000M1_scaffold_638_7
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4383..4829
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=2 Tax=Ruminococcus RepID=C6JH31_9FIRM
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
LSU ribosomal protein L9P
L3_114_000M1_scaffold_638_8
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4850..6178
DNA (1329bp) protein (443aa)
primary replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=2 Tax=Ruminococcus RepID=C6JH32_9FIRM
Replicative DNA helicase {ECO:0000313|EMBL:EES75659.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_114_000M1_scaffold_638_9
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6585..7055
DNA (471bp) protein (157aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JH33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76155.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted transcriptional regulators
L3_114_000M1_scaffold_638_10
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7125..7298)
DNA (174bp) protein (58aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JH35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75662.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
L3_114_000M1_scaffold_638_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7719..8897
DNA (1179bp) protein (393aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JH36_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76151.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
nucleoside-binding protein
L3_114_000M1_scaffold_638_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9152..10687
DNA (1536bp) protein (512aa)
nucleoside ABC transporter ATP-binding protein (EC:3.6.3.17)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JH37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76148.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_114_000M1_scaffold_638_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10684..11763
DNA (1080bp) protein (360aa)
Uncharacterized protein n=2 Tax=root RepID=C6JH38_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75665.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
nucleoside ABC transporter membrane protein
L3_114_000M1_scaffold_638_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11776..12756
DNA (981bp) protein (327aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JH39_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75666.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
nucleoside ABC transporter membrane protein
L3_114_000M1_scaffold_638_15
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12857..13057
DNA (201bp) protein (67aa)
Hydrid cluster protein-associated redox disulfide domain n=2 Tax=Ruminococcus RepID=C6JH40_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76144.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Domain of unknown function (DUF1858).
L3_114_000M1_scaffold_638_16
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13239..13985)
DNA (747bp) protein (249aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JH41_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76143.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Negative regulator of genetic competence, sporulation and motility
L3_114_000M1_scaffold_638_17
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14683..14883
DNA (201bp) protein (67aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JH42_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76142.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_114_000M1_scaffold_638_18
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15195..16844
DNA (1650bp) protein (550aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CDG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76141.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted glycosyl hydrolase
L3_114_000M1_scaffold_638_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17009..17704
DNA (696bp) protein (232aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase CwlD n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JH44_9FIRM
N-acetylmuramoyl-L-alanine amidase CwlD {ECO:0000313|EMBL:EES75671.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_114_000M1_scaffold_638_20
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17828..19840
DNA (2013bp) protein (671aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=T5M078_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQM98720.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_114_000M1_scaffold_638_21
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19980..22217
DNA (2238bp) protein (746aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JH47_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75674.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Chlor_Arch_YYY domain
L3_114_000M1_scaffold_638_22
unknown

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22229..22417
DNA (189bp) protein (63aa)

This feature has no annotations

L3_114_000M1_scaffold_638_23
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22522..23622
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CEI8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76137.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Listeria-Bacteroides repeat domain (List_Bact_rpt).
L3_114_000M1_scaffold_638_24
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23939..24991
DNA (1053bp) protein (351aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CDF6_9FIRM
Sua5/YciO/YrdC/YwlC family protein
L3_114_000M1_scaffold_638_25
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25124..25555
DNA (432bp) protein (144aa)
ribose-5-phosphate isomerase (EC:5.3.1.6)
RpiB/LacA/LacB family sugar-phosphate isomerase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JH50_9FIRM
RpiB/LacA/LacB family sugar-phosphate isomerase {ECO:0000313|EMBL:EES75677.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_114_000M1_scaffold_638_26
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25780..26271
DNA (492bp) protein (164aa)
Deoxycytidylate deaminase (EC:3.5.4.12)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JH51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75678.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Displaying 26 items

View Taxonomy