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L3_114_000M1_scaffold_781

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_781_1
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..210
DNA (210bp) protein (70aa)
Threonine aldolase (EC:4.1.2.5)
amino acid lyase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002FD726C
Uncharacterized protein {ECO:0000313|EMBL:CDD78294.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_114_000M1_scaffold_781_2
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(220..1383)
DNA (1164bp) protein (388aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Sensor protein copS n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CLT1_9FIRM
Signal transduction histidine kinase
L3_114_000M1_scaffold_781_3
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1388..2056)
DNA (669bp) protein (223aa)
chemotaxis protein CheY n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000303DFAF
Uncharacterized protein {ECO:0000313|EMBL:CDD78292.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_114_000M1_scaffold_781_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2543..3739
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002EEDFC8
Uncharacterized protein {ECO:0000313|EMBL:EES77518.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
AhpC/TSA family.
L3_114_000M1_scaffold_781_5
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3740..3904
DNA (165bp) protein (55aa)
thioredoxin n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002D7C5A6
Uncharacterized protein {ECO:0000313|EMBL:CDD79926.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_114_000M1_scaffold_781_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4018..4929
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQI1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79927.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
4Fe-4S binding domain-containing protein
L3_114_000M1_scaffold_781_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5182..6120
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CR52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79928.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
AraC-type DNA-binding domain-containing proteins
L3_114_000M1_scaffold_781_8
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6071..6637
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCM0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77514.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_114_000M1_scaffold_781_9
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6962..8251
DNA (1290bp) protein (430aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCL9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79930.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_114_000M1_scaffold_781_10
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8449..9348
DNA (900bp) protein (300aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77512.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
lactose transport system (permease)
L3_114_000M1_scaffold_781_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9341..10168
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCL7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77511.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_114_000M1_scaffold_781_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10495..13641
DNA (3147bp) protein (1049aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPR6_9FIRM
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CDD79936.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
diguanylate cyclase (GGDEF) domain
L3_114_000M1_scaffold_781_13
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13771..15360)
DNA (1590bp) protein (530aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JQI9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS36489.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
two component transcriptional regulator, arac family
L3_114_000M1_scaffold_781_14
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15357..17114)
DNA (1758bp) protein (586aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_63FAA RepID=F3AHM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG80693.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
integral membrane sensor signal transduction histidine kinase
L3_114_000M1_scaffold_781_15
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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17289..18620
DNA (1332bp) protein (444aa)
Extracellular solute-binding protein family 1 n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JIQ1_CELLD
ABC transporter substrate-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ADZ85521.1}; Flags: Precursor;; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_114_000M1_scaffold_781_16
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18679..19542
DNA (864bp) protein (288aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Ruminococcus torques L2-14 RepID=D4M0P4_9FIRM
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL27604.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_114_000M1_scaffold_781_17
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19542..20369
DNA (828bp) protein (276aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Ruminococcus torques L2-14 RepID=D4M0P5_9FIRM
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL27605.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_114_000M1_scaffold_781_18
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20426..21241
DNA (816bp) protein (272aa)
beta-lactamase domain-containing protein n=1 Tax=Treponema primitia RepID=UPI00025550E3
Putative metallo-beta-lactamase domain protein {ECO:0000313|EMBL:CDD09957.1}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
beta-lactamase domain-containing protein
L3_114_000M1_scaffold_781_19
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21532..22863
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QSM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK41752.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
putative AAA+ superfamily ATPase
L3_114_000M1_scaffold_781_20
Catenibacterium mitsuokai, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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23044..23223
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NQR7_9FIRM
Predicted ATPase (AAA+ superfamily)
Uncharacterized protein {ECO:0000313|EMBL:EEF94457.1}; TaxID=451640 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium.;" source="Catenibacterium mitsuokai DSM 15897.;"
L3_114_000M1_scaffold_781_21
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23370..23486)
DNA (117bp) protein (39aa)
Uncharacterized protein n=2 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JHT8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQM98751.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Transposase IS116/IS110/IS902 family.
Displaying 21 items

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