ggKbase home page

L3_114_000M1_scaffold_4234

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_4234_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..967
DNA (966bp) protein (322aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase n=2 Tax=Ruminococcus RepID=C6JGJ5_9FIRM
L3_114_000M1_scaffold_4234_2
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1436..2002
DNA (567bp) protein (189aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R7CM00_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78398.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
RNA polymerase sigma factor, sigma-70 family
L3_114_000M1_scaffold_4234_3
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1989..2357
DNA (369bp) protein (123aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JGJ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78399.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_114_000M1_scaffold_4234_4
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2341..2967
DNA (627bp) protein (209aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R7CKB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78400.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_114_000M1_scaffold_4234_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2964..3587
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=T5M0E7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQM98785.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_114_000M1_scaffold_4234_6
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3741..4061
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGJ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75870.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_114_000M1_scaffold_4234_7
Homo sapiens, Homo, Primates, Mammalia, Chordata, Metazoa

Not on your lists

comp(4698..5192)
DNA (495bp) protein (165aa)
PREDICTED: mucin-22-like n=1 Tax=Equus caballus RepID=UPI0003ACAACE
cDNA FLJ54412, moderately similar to Homo sapiens dentin sialophosphoprotein (DSPP), mRNA {ECO:0000313|EMBL:BAG63124.1}; TaxID=9606 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.;" source="Homo sapiens (Human).;"
hypothetical protein
L3_114_000M1_scaffold_4234_8
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5227..6159)
DNA (933bp) protein (311aa)
Peptide chain release factor 1 n=4 Tax=Lactobacillus casei group RepID=K6QTL8_LACCA
prfA; peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1378069 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 5b.;"
L3_114_000M1_scaffold_4234_9
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6257..6700)
DNA (444bp) protein (148aa)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=1256202 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei CNCM I-4270.;"
Thymidine kinase n=1 Tax=Lactobacillus paracasei subsp. paracasei CNCM I-4270 RepID=S2QLP1_LACPA
Thymidine kinase
Displaying 9 items

View Taxonomy