ggKbase home page

L3_114_000M1_scaffold_1307

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_1307_1
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..136
DNA (135bp) protein (45aa)
4Fe-4S ferredoxin n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00036E7531
Ferredoxin {ECO:0000313|EMBL:CDD76615.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_114_000M1_scaffold_1307_2
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

152..1765
DNA (1614bp) protein (538aa)
Aspartate oxidase (EC:1.3.99.1 1.4.3.16)
fumarate reductase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000315947E
L-aspartate oxidase {ECO:0000313|EMBL:CDD76623.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_114_000M1_scaffold_1307_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1936..2778
DNA (843bp) protein (281aa)
fumarase alpha subunit (EC:4.2.1.2)
Hydrolyase, tartrate alpha subunit/fumarate domain-containing protein, Fe-S type n=2 Tax=Ruminococcus RepID=C6J9E4_9FIRM
Hydrolyase, tartrate alpha subunit/fumarate domain-containing protein, Fe-S type {ECO:0000313|EMBL:EES78087.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_114_000M1_scaffold_1307_4
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2780..3346
DNA (567bp) protein (189aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region (EC:4.2.1.2)
Fumarate hydratase class I n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CFW8_9FIRM
Fumarate hydratase class I {ECO:0000313|EMBL:CDD76627.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_114_000M1_scaffold_1307_5
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3664..4365
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CEJ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76629.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_114_000M1_scaffold_1307_6
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4689..5168
DNA (480bp) protein (160aa)
NADH:ubiquinone oxidoreductase 24 kD subunit (EC:1.6.5.3)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9E7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78090.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_114_000M1_scaffold_1307_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5165..7036
DNA (1872bp) protein (624aa)
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit (EC:1.6.5.3)
NADH dehydrogenase I subunit F n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CH33_9FIRM
NADH dehydrogenase I subunit F {ECO:0000313|EMBL:CDD76633.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_114_000M1_scaffold_1307_8
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7052..8740
DNA (1689bp) protein (563aa)
hydrogenases, Fe-only (EC:1.6.5.3)
Hydrogenase, Fe-only n=2 Tax=Ruminococcus RepID=C6J9E9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76635.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_114_000M1_scaffold_1307_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9017..10486
DNA (1470bp) protein (490aa)
Stage IV sporulation protein A n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9F0_9FIRM
Stage IV sporulation protein A {ECO:0000313|EMBL:EES78093.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
stage IV sporulation protein A
L3_114_000M1_scaffold_1307_10
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10567..10938)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9F1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78094.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_114_000M1_scaffold_1307_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11309..12805
DNA (1497bp) protein (499aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9F2_9FIRM
L3_114_000M1_scaffold_1307_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12986..13855
DNA (870bp) protein (290aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=2 Tax=Ruminococcus RepID=C6J9F3_9FIRM
L3_114_000M1_scaffold_1307_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14071..15051
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9F4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78097.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_114_000M1_scaffold_1307_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15091..15336
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9F5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78098.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_114_000M1_scaffold_1307_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15352..16401
DNA (1050bp) protein (350aa)
Iron-only hydrogenase maturation rSAM protein HydE n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9F6_9FIRM
Iron-only hydrogenase maturation rSAM protein HydE {ECO:0000313|EMBL:EES78099.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
biotin synthase
L3_114_000M1_scaffold_1307_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16527..16847
DNA (321bp) protein (107aa)
thiamine biosynthesis protein ThiH n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000314B9C2
Iron-only hydrogenase maturation rSAM protein HydG {ECO:0000313|EMBL:EES78100.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
iron-only hydrogenase maturation protein HydG
Displaying 16 items

View Taxonomy