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L3_114_000M1_scaffold_2054

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_2054_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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353..2929
DNA (2577bp) protein (859aa)
Protein translocase subunit SecA n=2 Tax=Ruminococcus RepID=C6JE64_9FIRM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
protein translocase subunit secA
L3_114_000M1_scaffold_2054_2
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3212..4678
DNA (1467bp) protein (489aa)
Transporter n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CN44_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
sodium:neurotransmitter symporter
L3_114_000M1_scaffold_2054_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4808..5668)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JE66_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76487.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
transcriptional regulator, AraC family
L3_114_000M1_scaffold_2054_4
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6344..7192
DNA (849bp) protein (283aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPK2_9FIRM
L3_114_000M1_scaffold_2054_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7667..8656
DNA (990bp) protein (330aa)
Peptide chain release factor 2 n=2 Tax=Ruminococcus RepID=C6JE68_9FIRM
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
bacterial peptide chain release factor 2 (bRF-2)
L3_114_000M1_scaffold_2054_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8813..9268
DNA (456bp) protein (152aa)
ACT domain-containing protein (EC:5.4.99.5)
UPF0735 ACT domain-containing protein BN806_00301 n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CN51_9FIRM
UPF0735 ACT domain-containing protein BN806_00301 {ECO:0000256|HAMAP-Rule:MF_00707}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_114_000M1_scaffold_2054_7
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9275..10489
DNA (1215bp) protein (405aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=2 Tax=Ruminococcus RepID=C6JE70_9FIRM
L3_114_000M1_scaffold_2054_8
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10653..11861
DNA (1209bp) protein (403aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
aspartate kinase, monofunctional class (EC:2.7.2.4)
Aspartokinase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JE71_9FIRM
L3_114_000M1_scaffold_2054_9
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11876..12898
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CN69_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79395.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted integral membrane protein
L3_114_000M1_scaffold_2054_10
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13063..14778
DNA (1716bp) protein (572aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2AJI6_9CLOT
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
Uncharacterized protein {ECO:0000313|EMBL:EMZ24569.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
L3_114_000M1_scaffold_2054_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14917..16197
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JE73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76494.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted aminopeptidases
L3_114_000M1_scaffold_2054_12
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16377..18536
DNA (2160bp) protein (720aa)
Competence protein ComEA helix-hairpin-helix repeat region n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JE74_9FIRM
Competence protein ComEA helix-hairpin-helix repeat region {ECO:0000313|EMBL:EES76495.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Transcriptional accessory protein
L3_114_000M1_scaffold_2054_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18623..19513)
DNA (891bp) protein (297aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JE75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76496.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
LysR family transcriptional regulator, transcription activator of glutamate synthase operon
Displaying 13 items

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