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L3_114_000M1_scaffold_500

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_500_1
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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207..548
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZFY4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA37700.1}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
L3_114_000M1_scaffold_500_2
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

577..2310
DNA (1734bp) protein (578aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZT70_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA37701.1}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
hypothetical protein
L3_114_000M1_scaffold_500_3
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2405..2941
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:568 RepID=R6A9C2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA37702.1}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
L3_114_000M1_scaffold_500_4
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2952..4949
DNA (1998bp) protein (666aa)
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZD22_9CLOT
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:CDA37703.1}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
L3_114_000M1_scaffold_500_5
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4941..5498)
DNA (558bp) protein (186aa)
ADP-ribose pyrophosphatase n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZMD2_9CLOT
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:CDA37704.1}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
MutT/nudix family protein
L3_114_000M1_scaffold_500_6
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5574..6563
DNA (990bp) protein (330aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
Phosphate acyltransferase n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZFY9_9CLOT
plsX; glycerol-3-phosphate acyltransferase PlsX
L3_114_000M1_scaffold_500_7
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6553..7329
DNA (777bp) protein (259aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZT80_9CLOT
L3_114_000M1_scaffold_500_8
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7332..9323
DNA (1992bp) protein (664aa)
Signal recognition particle receptor FtsY n=1 Tax=Clostridium sp. CAG:568 RepID=R6A9C5_9CLOT
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
ftsY; cell division protein FtsY
L3_114_000M1_scaffold_500_9
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9326..9661
DNA (336bp) protein (112aa)
UPF0122 protein ANASTE_02294 n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZD25_9CLOT
UPF0122 protein ANASTE_02294 {ECO:0000313|EMBL:CDA37708.1}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
hypothetical protein
L3_114_000M1_scaffold_500_10
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9651..11000
DNA (1350bp) protein (450aa)
Signal recognition particle protein n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZME1_9CLOT
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
ffh; signal recognition particle protein
L3_114_000M1_scaffold_500_11
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11355..12086)
DNA (732bp) protein (244aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZFZ5_9CLOT
L3_114_000M1_scaffold_500_12
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12083..12580)
DNA (498bp) protein (166aa)
Ribosome maturation factor RimM n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZT82_9CLOT
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
rimM; ribosome maturation factor rimM
L3_114_000M1_scaffold_500_13
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12679..12948)
DNA (270bp) protein (90aa)
UPF0109 protein BMQ_4213 n=1 Tax=Clostridium sp. CAG:568 RepID=R6A9D1_9CLOT
UPF0109 protein BMQ_4213 {ECO:0000313|EMBL:CDA37712.1}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
hypothetical protein
L3_114_000M1_scaffold_500_14
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12973..13257)
DNA (285bp) protein (95aa)
30S ribosomal protein S16 n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZD29_9CLOT
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
ribosomal protein S16
L3_114_000M1_scaffold_500_15
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13431..14978
DNA (1548bp) protein (516aa)
2-keto-3-deoxygluconate permease 1 (KDG permease 1) n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZME4_9CLOT
2-keto-3-deoxygluconate permease 1 (KDG permease 1) {ECO:0000313|EMBL:CDA37714.1}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
kdgT1; 2-keto-3-deoxygluconate permease KdgT
L3_114_000M1_scaffold_500_16
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15098..15826
DNA (729bp) protein (243aa)
Alpha-acetolactate decarboxylase n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZG00_9CLOT
Alpha-acetolactate decarboxylase {ECO:0000313|EMBL:CDA37715.1}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
alpha-acetolactate decarboxylase
L3_114_000M1_scaffold_500_17
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15937..16452)
DNA (516bp) protein (172aa)
50S ribosomal protein L19 n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZT86_9CLOT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
rplS; 50S ribosomal protein L19
L3_114_000M1_scaffold_500_18
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16666..17493)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:568 RepID=R6A9D6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA37717.1}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
protein tyrosine phosphatase
L3_114_000M1_scaffold_500_19
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17577..18710)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZD33_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA37718.1}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
L3_114_000M1_scaffold_500_20
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


19025..19426
DNA (402bp) protein (134aa)
50S ribosomal protein L11 n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZMF0_9CLOT
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
rplK; 50S ribosomal protein L11
L3_114_000M1_scaffold_500_21
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


19441..20130
DNA (690bp) protein (230aa)
50S ribosomal protein L1 n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZG03_9CLOT
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
50S ribosomal protein L1
L3_114_000M1_scaffold_500_22
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


20299..20844
DNA (546bp) protein (182aa)
50S ribosomal protein L10 n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZT88_9CLOT
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
50S ribosomal protein L10
L3_114_000M1_scaffold_500_23
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


20880..21248
DNA (369bp) protein (123aa)
50S ribosomal protein L7/L12 n=1 Tax=Clostridium sp. CAG:568 RepID=R6A9E2_9CLOT
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
rplL; 50S ribosomal protein L7/L12
L3_114_000M1_scaffold_500_24
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21417..25556
DNA (4140bp) protein (1380aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZD37_9CLOT
L3_114_000M1_scaffold_500_25
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25572..29654
DNA (4083bp) protein (1361aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZMF4_9CLOT
rpoC; DNA-directed RNA polymerase subunit beta'
L3_114_000M1_scaffold_500_26
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30000..30884
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:568 RepID=R5ZG10_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA37725.1}; TaxID=1262821 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
Displaying 26 items

View Taxonomy