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L3_114_123G1_scaffold_23

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Displaying items 1-30 of 147 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_123G1_scaffold_23_1
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..310
DNA (309bp) protein (103aa)
Putative efflux protein, MATE family n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GV88_9FIRM
putative efflux protein, MATE family
Putative efflux protein MATE family {ECO:0000313|EMBL:CCY09445.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_114_123G1_scaffold_23_2
Lachnoanaerobaculum sp. OBRC5-5, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(228..1049)
DNA (822bp) protein (274aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=936595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. OBRC5-5.;"
Uncharacterized protein n=1 Tax=Clostridiales bacterium OBRC5-5 RepID=K0XQQ4_9FIRM
pyridoxal/pyridoxine/pyridoxamine kinase
L3_114_123G1_scaffold_23_3
Blautia sp. CAG:52, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1052..1864)
DNA (813bp) protein (271aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131};; TaxID=1262758 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:52.;"
tryptophan synthase, alpha chain (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Blautia sp. CAG:52 RepID=R6GAR1_9FIRM
L3_114_123G1_scaffold_23_4
Selenomonas ruminantium, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(1821..3008)
DNA (1188bp) protein (396aa)
trpB; putative tryptophan synthase beta chain (EC:4.2.1.20)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=927704 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 /; TAM6421).;"
Tryptophan synthase beta chain n=1 Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GPM2_SELRL
L3_114_123G1_scaffold_23_5
Lachnoanaerobaculum saburreum, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3017..3655)
DNA (639bp) protein (213aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=887325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum saburreum DSM 3986.;"
trpF; phosphoribosylanthranilate isomerase TrpF (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Lachnoanaerobaculum saburreum DSM 3986 RepID=E6LSA3_9FIRM
L3_114_123G1_scaffold_23_6
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3652..4437)
DNA (786bp) protein (262aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase n=1 Tax=Clostridium sp. MSTE9 RepID=J0MVH6_9CLOT
L3_114_123G1_scaffold_23_7
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

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comp(4447..5454)
DNA (1008bp) protein (336aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
trpD; Anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5YBX1_9FIRM
L3_114_123G1_scaffold_23_8
Lachnospiraceae bacterium TWA4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5467..6039)
DNA (573bp) protein (191aa)
TWA4_scaffold00001, whole genome shotgun sequence {ECO:0000313|EMBL:KIR03024.1}; EC=4.1.3.27 {ECO:0000313|EMBL:KIR03024.1};; TaxID=1392836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium TWA4.;"
anthranilate synthase, component II (EC:4.1.3.27)
Para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5XHM2_9FIRM
L3_114_123G1_scaffold_23_9
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6041..7636)
DNA (1596bp) protein (532aa)
anthranilate synthase component I (EC:4.1.3.27)
Anthranilate synthase component I n=1 Tax=Roseburia sp. CAG:303 RepID=R7IMS9_9FIRM
Anthranilate synthase component I {ECO:0000313|EMBL:CDE52796.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
L3_114_123G1_scaffold_23_10
Oribacterium parvum, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7943..8866
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Oribacterium sp. ACB8 RepID=J0LMY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL09517.1}; TaxID=796943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium parvum ACB1.;"
cell wall binding repeat-containing protein
L3_114_123G1_scaffold_23_11
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8927..10066)
DNA (1140bp) protein (380aa)
Transporter major facilitator family n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6PD15_9FIRM
Transporter major facilitator family {ECO:0000313|EMBL:CDC07742.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
putative membrane protein
L3_114_123G1_scaffold_23_12
unknown

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10155..10331
DNA (177bp) protein (59aa)

This feature has no annotations

L3_114_123G1_scaffold_23_13
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10296..11042)
DNA (747bp) protein (249aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HQ03_9CLOT
L3_114_123G1_scaffold_23_14
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11080..12291)
DNA (1212bp) protein (404aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=2 Tax=Clostridium RepID=D3AGJ8_9CLOT
L3_114_123G1_scaffold_23_15
Lachnoanaerobaculum sp. MSX33, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12367..13398)
DNA (1032bp) protein (344aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=936596 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. MSX33.;"
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Lachnospiraceae oral taxon 107 str. F0167 RepID=F3B4T3_9FIRM
L3_114_123G1_scaffold_23_16
Oribacterium sp. oral taxon 108, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13640..15808)
DNA (2169bp) protein (723aa)
Uncharacterized protein n=1 Tax=Oribacterium sp. oral taxon 108 str. F0425 RepID=F5T6U9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGL36861.1}; TaxID=904296 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium sp. oral taxon 108 str. F0425.;"
L3_114_123G1_scaffold_23_17
Oribacterium sp. oral taxon 078, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15795..16481)
DNA (687bp) protein (229aa)
Putative heme ABC exporter, ATP-binding protein CcmA n=1 Tax=Oribacterium sp. oral taxon 078 str. F0262 RepID=D4CLH5_9FIRM
Putative heme ABC exporter, ATP-binding protein CcmA {ECO:0000313|EMBL:EFE92186.1}; TaxID=608534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium sp. oral taxon 078 str. F0262.;"
ABC transporter ATP-binding protein
L3_114_123G1_scaffold_23_18
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16441..18117)
DNA (1677bp) protein (559aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IKC4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI58079.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
Na/Pi-cotransporter II-like protein
L3_114_123G1_scaffold_23_19
Johnsonella ignava, Johnsonella, Clostridiales, Clostridia, Firmicutes, Bacteria

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18250..19062
DNA (813bp) protein (271aa)
Putative uncharacterized protein n=1 Tax=Johnsonella ignava ATCC 51276 RepID=G5GF83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHI56774.1}; TaxID=679200 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Johnsonella.;" source="Johnsonella ignava ATCC 51276.;"
HisJ family histidinol phosphate phosphatase
L3_114_123G1_scaffold_23_20
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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19109..19591
DNA (483bp) protein (161aa)
mgsA; methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Methylglyoxal synthase n=2 Tax=Roseburia RepID=R5HT88_9FIRM
L3_114_123G1_scaffold_23_21
Lachnoanaerobaculum sp. MSX33, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19665..21221)
DNA (1557bp) protein (519aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=936596 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. MSX33.;"
Ribonuclease Y n=1 Tax=Clostridiales bacterium OBRC5-5 RepID=K0Y1A4_9FIRM
metal dependent phosphohydrolase
L3_114_123G1_scaffold_23_22
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21330..21923)
DNA (594bp) protein (198aa)
Regulatory protein RecX n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5INB3_9CLOT
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
regulatory protein RecX
L3_114_123G1_scaffold_23_23
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21923..22963)
DNA (1041bp) protein (347aa)
Protein RecA n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CZ21_9CLOT
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
protein RecA
L3_114_123G1_scaffold_23_24
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23418..24854)
DNA (1437bp) protein (479aa)
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504, ECO:0000313|EMBL:CBK76255.1}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504, ECO:0000313|EMBL:CBK76255.1};; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
Pyruvate kinase n=2 Tax=Clostridium RepID=D6DEY1_CLOSC
L3_114_123G1_scaffold_23_25
Lachnospiraceae oral taxon 107, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24948..25751)
DNA (804bp) protein (268aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae oral taxon 107 str. F0167 RepID=F3B1V7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG86561.1}; TaxID=575593 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae oral taxon 107 str. F0167.;"
hypothetical protein
L3_114_123G1_scaffold_23_26
Lachnospiraceae bacterium oral taxon 082, Clostridiales, Clostridia, Firmicutes, Bacteria

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25919..30172
DNA (4254bp) protein (1418aa)
Putative CoA-substrate-specific enzyme activase n=1 Tax=Lachnospiraceae bacterium oral taxon 082 str. F0431 RepID=H1LYT8_9FIRM
Putative CoA-substrate-specific enzyme activase {ECO:0000313|EMBL:EHO49938.1}; TaxID=861454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium oral taxon 082 str. F0431.;"
CoA-substrate-specific enzyme activase, putative
L3_114_123G1_scaffold_23_27
Johnsonella ignava, Johnsonella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30267..31178)
DNA (912bp) protein (304aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=679200 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Johnsonella.;" source="Johnsonella ignava ATCC 51276.;"
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase n=1 Tax=Johnsonella ignava ATCC 51276 RepID=G5GFA6_9FIRM
L3_114_123G1_scaffold_23_28
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31198..33153)
DNA (1956bp) protein (652aa)
DNA ligase, NAD-dependent (EC:6.5.1.2)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000313|EMBL:CBK76181.1};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
DNA ligase n=3 Tax=Clostridium RepID=D6DEQ7_CLOSC
L3_114_123G1_scaffold_23_29
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33146..33817)
DNA (672bp) protein (224aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:7 RepID=R5INZ5_9CLOT
pseudouridine synthase
L3_114_123G1_scaffold_23_30
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33864..34931)
DNA (1068bp) protein (356aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EVD0_9FIRM
S-adenosylmethionine/tRNA-ribosyltransferase-isomerase
Displaying items 1-30 of 147 in total

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