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L3_114_237G1_scaffold_219

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_237G1_scaffold_219_1
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(154..3039)
DNA (2886bp) protein (962aa)
UvrABC system protein A n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYT1_9FIRM
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
uvrA; UvrABC system protein A
L3_114_237G1_scaffold_219_2
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3036..5036)
DNA (2001bp) protein (667aa)
UvrABC system protein B n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYT2_9FIRM
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Excinuclease ABC subunit B
L3_114_237G1_scaffold_219_3
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5261..7423)
DNA (2163bp) protein (721aa)
Ferrous iron transporter B n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYT3_9FIRM
Iron transporter FeoB {ECO:0000313|EMBL:KJF41556.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
putative ferrous iron transport protein B
L3_114_237G1_scaffold_219_4
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7444..7680)
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYT4_9FIRM
Iron transporter FeoA {ECO:0000313|EMBL:KJF41557.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
FeoA family protein
L3_114_237G1_scaffold_219_5
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7795..8220
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYT5_9FIRM
DNA-binding protein {ECO:0000313|EMBL:KJF41558.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
iron dependent repressor
L3_114_237G1_scaffold_219_6
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8310..9008)
DNA (699bp) protein (233aa)
DNA repair protein RadC n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYT6_9FIRM
DNA repair protein RadC {ECO:0000313|EMBL:EHL64610.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
radC; putative DNA repair protein radC
L3_114_237G1_scaffold_219_7
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9088..10041
DNA (954bp) protein (318aa)
Pseudouridylate synthases, 23S RNA-specific (EC:5.4.99.12)
RluA family pseudouridine synthase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYT7_9FIRM
RluA family pseudouridine synthase {ECO:0000313|EMBL:EHL64611.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_114_237G1_scaffold_219_8
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10154..12280)
DNA (2127bp) protein (709aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
membrane protease FtsH catalytic subunit (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYT8_9FIRM
L3_114_237G1_scaffold_219_9
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12364..12915)
DNA (552bp) protein (184aa)
Hypoxanthine phosphoribosyltransferase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYT9_9FIRM
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EHL64613.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypoxanthine phosphoribosyltransferase
L3_114_237G1_scaffold_219_10
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12912..14306)
DNA (1395bp) protein (465aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain (EC:6.3.4.-)
tRNA(Ile)-lysidine synthase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYU0_9FIRM
L3_114_237G1_scaffold_219_11
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14299..15696)
DNA (1398bp) protein (466aa)
primary replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYU1_9FIRM
Replicative DNA helicase {ECO:0000313|EMBL:EHL64615.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_114_237G1_scaffold_219_12
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15748..16191)
DNA (444bp) protein (148aa)
50S ribosomal protein L9 n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYU2_9FIRM
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
50S ribosomal protein L9
L3_114_237G1_scaffold_219_13
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16377..18356)
DNA (1980bp) protein (660aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYU3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64617.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
phosphoesterase RecJ domain-containing protein
L3_114_237G1_scaffold_219_14
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18400..20274)
DNA (1875bp) protein (625aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64618.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_114_237G1_scaffold_219_15
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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20716..21153
DNA (438bp) protein (146aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
rnhA; ribonuclease HI (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYU5_9FIRM
L3_114_237G1_scaffold_219_16
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21304..22476
DNA (1173bp) protein (391aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Cysteine desulfurase NifS n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYU6_9FIRM
Cysteine desulfurase {ECO:0000313|EMBL:KJF41565.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L3_114_237G1_scaffold_219_17
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22516..22947
DNA (432bp) protein (144aa)
FeS cluster assembly scaffold protein NifU n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYU7_9FIRM
Nitrogen fixation protein NifU {ECO:0000313|EMBL:KJF41607.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L3_114_237G1_scaffold_219_18
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23065..24144
DNA (1080bp) protein (360aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYU8_9FIRM
L3_114_237G1_scaffold_219_19
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24261..24443
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYU9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF41566.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L3_114_237G1_scaffold_219_20
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24454..27525)
DNA (3072bp) protein (1024aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYV0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF41567.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
diguanylate cyclase/phosphodiesterase
L3_114_237G1_scaffold_219_21
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27703..29436)
DNA (1734bp) protein (578aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64625.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
FAD linked oxidase domain-containing protein
L3_114_237G1_scaffold_219_22
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29565..29942)
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYV2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF41569.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_114_237G1_scaffold_219_23
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29939..31195)
DNA (1257bp) protein (419aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64627.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_114_237G1_scaffold_219_24
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31182..32942)
DNA (1761bp) protein (587aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYV4_9FIRM
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KJF41571.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
FAD dependent oxidoreductase
L3_114_237G1_scaffold_219_25
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33132..33695
DNA (564bp) protein (188aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYV5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF41572.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
TetR family transcriptional regulator
L3_114_237G1_scaffold_219_26
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34236..35330)
DNA (1095bp) protein (365aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64630.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_114_237G1_scaffold_219_27
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35398..37122)
DNA (1725bp) protein (575aa)
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase (Fragment) n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RQQ2_9FIRM
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:KJF38133.1}; Flags: Fragment;; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L3_114_237G1_scaffold_219_28
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37497..38177
DNA (681bp) protein (227aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYV8_9FIRM
Chloramphenicol acetyltransferase {ECO:0000313|EMBL:KJF41021.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
acetyltransferase
L3_114_237G1_scaffold_219_29
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38258..38689)
DNA (432bp) protein (144aa)
Putative endoribonuclease L-PSP n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYV9_9FIRM
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:EHL64266.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
endoribonuclease L-PSP, putative
L3_114_237G1_scaffold_219_30
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38924..39760
DNA (837bp) protein (279aa)
Delta-lactam-biosynthetic de-N-acetylase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYW0_9FIRM
Delta-lactam-biosynthetic de-N-acetylase {ECO:0000313|EMBL:EHL64267.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
delta-lactam-biosynthetic de-N-acetylase
Displaying items 1-30 of 35 in total

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