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L3_114_237G1_scaffold_234

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_237G1_scaffold_234_1
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..695)
DNA (693bp) protein (231aa)
Alanine racemase {ECO:0000256|RuleBase:RU004247, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|RuleBase:RU004247, ECO:0000256|SAAS:SAAS00021659};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Alanine racemase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW9_9FIRM
alanine racemase
L3_114_237G1_scaffold_234_2
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(692..1444)
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75013.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
peptidase M15
L3_114_237G1_scaffold_234_3
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1441..2484)
DNA (1044bp) protein (348aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
D-alanine--D-alanine ligase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW7_9FIRM
D-alanine--D-alanine ligase
L3_114_237G1_scaffold_234_4
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2720..3142
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75011.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
MarR family transcriptional regulator
L3_114_237G1_scaffold_234_5
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3295..5037
DNA (1743bp) protein (581aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW5_9FIRM
ABC transporter {ECO:0000313|EMBL:KJF39416.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
ABC-type multidrug transport system, ATPase and permease components
L3_114_237G1_scaffold_234_6
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5018..6937
DNA (1920bp) protein (640aa)
xenobiotic-transporting ATPase (EC:3.6.3.44)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75009.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_114_237G1_scaffold_234_7
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7007..7630)
DNA (624bp) protein (208aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75008.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_114_237G1_scaffold_234_8
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8074..8544
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75007.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
5-nitroimidazole antibiotic resistance protein
L3_114_237G1_scaffold_234_9
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8982..9296
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75006.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
regulatory protein ArsR
L3_114_237G1_scaffold_234_10
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9387..10388
DNA (1002bp) protein (334aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75005.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Predicted permeases
L3_114_237G1_scaffold_234_11
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10408..10752
DNA (345bp) protein (115aa)
Redox-active disulfide protein 2 n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNV9_9FIRM
Redox-active disulfide protein 2 {ECO:0000313|EMBL:EHL75004.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
small redox-active disulfide protein 2
L3_114_237G1_scaffold_234_12
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11001..11168
DNA (168bp) protein (56aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75003.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_114_237G1_scaffold_234_13
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11369..12637)
DNA (1269bp) protein (423aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNV7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75002.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
major facilitator superfamily protein
L3_114_237G1_scaffold_234_14
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12792..13025
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:KJF39421.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L3_114_237G1_scaffold_234_15
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13558..13809
DNA (252bp) protein (84aa)
Putative uncharacterized protein n=21 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CN22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO18781.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
transposase mutator type
L3_114_237G1_scaffold_234_16
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14030..14818)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D4X2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJF39422.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L3_114_237G1_scaffold_234_17
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(15026..16462)
DNA (1437bp) protein (479aa)
GntP family permease n=1 Tax=Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 RepID=U1GTY3_TRESO
GntP family permease {ECO:0000313|EMBL:ERF60069.1}; TaxID=1125725 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536.;"
H+/gluconate symporter family protein
L3_114_237G1_scaffold_234_18
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16568..17440)
DNA (873bp) protein (291aa)
Sugar phosphate isomerases/epimerases (EC:5.3.99.-)
Putative inosose isomerase n=1 Tax=Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 RepID=U1GTY8_TRESO
Sugar phosphate isomerase {ECO:0000313|EMBL:KJF39423.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L3_114_237G1_scaffold_234_19
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17454..18536)
DNA (1083bp) protein (361aa)
Oxidoreductase, NAD-binding domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D4X5_9CLOT
Oxidoreductase {ECO:0000313|EMBL:KJF39424.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Predicted dehydrogenases and related proteins
L3_114_237G1_scaffold_234_20
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18559..20277)
DNA (1719bp) protein (573aa)
dihydroxy-acid dehydratase (EC:4.2.1.9)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IKB5_9CLOT
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:KJF39425.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L3_114_237G1_scaffold_234_21
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20682..21383)
DNA (702bp) protein (234aa)
FCD domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D509_9CLOT
GntR family transcriptional regulator {ECO:0000313|EMBL:KJF39426.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
transcriptional regulator
L3_114_237G1_scaffold_234_22
unknown

Not on your lists

22807..23358
DNA (552bp) protein (184aa)

This feature has no annotations

L3_114_237G1_scaffold_234_23
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23413..24243)
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI0003821063
Uncharacterized protein {ECO:0000313|EMBL:KJF39443.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
binding-protein-dependent transporters inner membrane component
L3_114_237G1_scaffold_234_24
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24280..25173)
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Spirochaeta alkalica RepID=UPI0003723D88
Uncharacterized protein {ECO:0000313|EMBL:KJF39427.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
binding-protein-dependent transporters inner membrane component
L3_114_237G1_scaffold_234_25
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25278..26618)
DNA (1341bp) protein (447aa)
hypothetical protein n=1 Tax=Spirochaeta alkalica RepID=UPI00035C117C
Uncharacterized protein {ECO:0000313|EMBL:KJF39428.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
sugar ABC transporter periplasmic protein
L3_114_237G1_scaffold_234_26
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26682..27836)
DNA (1155bp) protein (385aa)
Uncharacterized protein {ECO:0000313|EMBL:KJF39429.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L3_114_237G1_scaffold_234_27
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27859..29064)
DNA (1206bp) protein (402aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036F2C49
N-acetylglucosamine-6-phosphate deacetylase
L3_114_237G1_scaffold_234_28
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29069..29875)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Amycolatopsis methanolica RepID=UPI00036A85D1
Uncharacterized protein {ECO:0000313|EMBL:KJF39431.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
metal-dependent hydrolase
L3_114_237G1_scaffold_234_29
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29877..30632)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BA15_STRRD
Uncharacterized protein {ECO:0000313|EMBL:KJF39432.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_114_237G1_scaffold_234_30
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30626..32563)
DNA (1938bp) protein (646aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QQ5_SOLUE
Uncharacterized protein {ECO:0000313|EMBL:KJF39433.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
xylan esterase
Displaying items 1-30 of 41 in total

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