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L3_114_237G1_scaffold_272

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_237G1_scaffold_272_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

255..803
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CG61_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83540.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_114_237G1_scaffold_272_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

813..1430
DNA (618bp) protein (206aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=E4V7I1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22224.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_114_237G1_scaffold_272_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1855..2865
DNA (1011bp) protein (337aa)
cysK; cysteine synthase CysK (EC:4.2.1.22)
Cystathionine beta-synthase n=5 Tax=Bifidobacterium bifidum RepID=I3WJ53_BIFBI
Cystathionine beta-synthase {ECO:0000313|EMBL:ADO53507.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_114_237G1_scaffold_272_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2967..4154
DNA (1188bp) protein (396aa)
metB; cystathionine gamma-synthase (EC:2.5.1.48)
Cystathionine beta-lyase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DPL7_BIFBI
Cystathionine beta-lyase {ECO:0000313|EMBL:ERI83537.1}; Cystathionine gamma-synthase {ECO:0000313|EMBL:BAQ98539.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_114_237G1_scaffold_272_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4329..6341
DNA (2013bp) protein (671aa)
ATP-dependent DNA helicase RecQ n=2 Tax=Bifidobacterium bifidum RepID=U2DUR0_BIFBI
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:ERI83536.1}; DNA helicase RecQ {ECO:0000313|EMBL:BAQ98538.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
recQ; ATP-dependent DNA helicase RecQ
L3_114_237G1_scaffold_272_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6510..6995
DNA (486bp) protein (162aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
S-ribosylhomocysteine lyase n=5 Tax=Bifidobacterium bifidum RepID=E3EP87_BIFBS
luxS; Autoinducer-2 production protein LuxS
L3_114_237G1_scaffold_272_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7227..7712
DNA (486bp) protein (162aa)
CysE Serine O-acetyltransferase n=8 Tax=Bifidobacterium RepID=E4NXZ2_BIFBP
cysE; serine O-acetyltransferase
CysE Serine O-acetyltransferase {ECO:0000313|EMBL:CDB22218.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_114_237G1_scaffold_272_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7882..9309)
DNA (1428bp) protein (476aa)
Amino acid transporter n=6 Tax=Bifidobacterium RepID=E3EP84_BIFBS
potE; amino acid transporter
Amino acid transporter {ECO:0000313|EMBL:AFL04911.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_114_237G1_scaffold_272_9
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9544..10902
DNA (1359bp) protein (453aa)
alr; alanine racemase (EC:5.1.1.1)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Alanine racemase n=4 Tax=Bifidobacterium RepID=I3WJ47_BIFBI
L3_114_237G1_scaffold_272_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11017..12297
DNA (1281bp) protein (427aa)
Deoxyguanosinetriphosphate triphosphohydrolase (DGTPase) n=4 Tax=Bifidobacterium bifidum RepID=E3EP82_BIFBS
dgt; deoxyguanosinetriphosphate triphosphohydrolase
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000313|EMBL:EKF16248.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_114_237G1_scaffold_272_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12352..14442
DNA (2091bp) protein (697aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
DNA primase n=7 Tax=Bifidobacterium bifidum RepID=E3EP81_BIFBS
dnaG; DNA primase
L3_114_237G1_scaffold_272_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14786..15655)
DNA (870bp) protein (290aa)
Transcriptional regulator n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJ44_BIFBI
rpiR; transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AFL04907.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_114_237G1_scaffold_272_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15786..17063)
DNA (1278bp) protein (426aa)
Putative transcriptional regulator n=2 Tax=Bifidobacterium bifidum RepID=I3WJ43_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83526.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
transcriptional regulator
L3_114_237G1_scaffold_272_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17404..17694
DNA (291bp) protein (97aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=E4V7G9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22211.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_114_237G1_scaffold_272_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18043..20007)
DNA (1965bp) protein (655aa)
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|SAAS:SAAS00085897};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Dxs 1-deoxy-D-xylulose 5-phosphate synthase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXY4_BIFBP
L3_114_237G1_scaffold_272_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20263..21252
DNA (990bp) protein (330aa)
Zeta-crystallin n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJ40_BIFBI
cryZ; zeta-crystallin
Zeta-crystallin {ECO:0000313|EMBL:AFL04903.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_114_237G1_scaffold_272_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21296..21793
DNA (498bp) protein (166aa)
purE; phosphoribosylaminoimidazole carboxylasecatalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJ39_BIFBI
L3_114_237G1_scaffold_272_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21777..22946
DNA (1170bp) protein (390aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit n=4 Tax=Bifidobacterium RepID=E3EP74_BIFBS
purK; phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit
L3_114_237G1_scaffold_272_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23098..23493
DNA (396bp) protein (132aa)
Ferric uptake regulator, Fur family n=4 Tax=Bifidobacterium bifidum RepID=E3EP73_BIFBS
zurR; transcriptional regulator
Putative metal uptake regulator {ECO:0000313|EMBL:BAQ98524.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_114_237G1_scaffold_272_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23651..23920)
DNA (270bp) protein (90aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=I3WJ36_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83573.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_114_237G1_scaffold_272_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23917..24717)
DNA (801bp) protein (267aa)
Conserved hypothetical membrane protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJ35_BIFBI
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:AFL04898.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_114_237G1_scaffold_272_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24722..25843)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJ34_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04897.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_114_237G1_scaffold_272_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(26053..26223)
DNA (171bp) protein (57aa)
50S ribosomal protein L32 n=2 Tax=Bifidobacterium bifidum RepID=E3EP69_BIFBS
rpmF; 50S ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_114_237G1_scaffold_272_24
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26223..26345)
DNA (123bp) protein (41aa)
50S ribosomal protein L36 n=8 Tax=Bifidobacterium RepID=E3EP68_BIFBS
50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_114_237G1_scaffold_272_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(26538..26795)
DNA (258bp) protein (86aa)
50S ribosomal protein L31 type B n=4 Tax=Bifidobacterium RepID=I3WJ31_BIFBI
rpmE; 50S ribosomal protein L31
50S ribosomal protein L31 type B {ECO:0000256|HAMAP-Rule:MF_00502, ECO:0000256|SAAS:SAAS00004504}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_114_237G1_scaffold_272_26
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(26842..27147)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=7 Tax=Bifidobacterium RepID=E4NXX3_BIFBP
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_114_237G1_scaffold_272_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(27224..27520)
DNA (297bp) protein (99aa)
50S ribosomal protein L28 n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJ29_BIFBI
rpmB; 50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_114_237G1_scaffold_272_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27570..28337
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJ28_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04891.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_114_237G1_scaffold_272_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28458..29366
DNA (909bp) protein (303aa)
Metal ABC transporter substrate-binding protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2LBY3_BIFBI
Metal ABC transporter substrate-binding protein {ECO:0000313|EMBL:EKF15399.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
metal ABC transporter substrate-binding protein
L3_114_237G1_scaffold_272_30
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30039..32657)
DNA (2619bp) protein (873aa)
Lysyl-tRNA synthetase n=2 Tax=Bifidobacterium RepID=I3WJ26_BIFBI
lysyl-tRNA synthetase
Lysyl-tRNA synthetase {ECO:0000313|EMBL:CDB22192.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Displaying items 1-30 of 49 in total

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