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L3_114_360G1_scaffold_4

Search features with annotation key words

Displaying items 1-30 of 262 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_360G1_scaffold_4_1
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..876)
DNA (876bp) protein (292aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B810_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46211.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_114_360G1_scaffold_4_2
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(877..2631)
DNA (1755bp) protein (585aa)
CRISPR-associated protein, Csd1 family n=4 Tax=Clostridiales RepID=A7B811_RUMGN
CRISPR-associated protein cas8c/csd1, subtype I-c/dvulg {ECO:0000313|EMBL:ETD20912.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
CRISPR-associated protein, Csd1 family
L3_114_360G1_scaffold_4_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2628..3290)
DNA (663bp) protein (221aa)
CRISPR-associated protein Cas5, Dvulg subtype n=4 Tax=Clostridiales RepID=A7B812_RUMGN
CRISPR-associated protein Cas5, Dvulg subtype {ECO:0000313|EMBL:EEA82743.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
CRISPR-associated protein, Csd5d family
L3_114_360G1_scaffold_4_4
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3316..3756)
DNA (441bp) protein (147aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B813_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20914.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_114_360G1_scaffold_4_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3740..4207)
DNA (468bp) protein (156aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B814_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EEA82745.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_114_360G1_scaffold_4_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4542..6707)
DNA (2166bp) protein (722aa)
CRISPR-associated endonuclease Cas3-HD {ECO:0000313|EMBL:EEA82746.1}; EC=3.1.-.- {ECO:0000313|EMBL:EEA82746.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
CRISPR-associated endonuclease Cas3-HD n=4 Tax=Clostridiales RepID=A7B815_RUMGN
CRISPR-associated helicase, Cas3 family
L3_114_360G1_scaffold_4_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6774..6917)
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B816_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN76109.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_114_360G1_scaffold_4_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7139..8581)
DNA (1443bp) protein (481aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EEA84039.1}; EC=2.1.1.- {ECO:0000313|EMBL:EEA84039.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIT4_9CLOT
L3_114_360G1_scaffold_4_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8737..9153
DNA (417bp) protein (139aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FIT5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22362.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_114_360G1_scaffold_4_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9225..9794)
DNA (570bp) protein (190aa)
Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIT6_9CLOT
Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EEA84041.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
phosphatidylglycerophosphate synthase
L3_114_360G1_scaffold_4_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9861..10103)
DNA (243bp) protein (81aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FIT7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA84042.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_114_360G1_scaffold_4_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10214..12439)
DNA (2226bp) protein (742aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
ATP-dependent DNA helicase PcrA n=2 Tax=Clostridium RepID=B6FIS4_9CLOT
L3_114_360G1_scaffold_4_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12436..12813)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIS5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA84044.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_114_360G1_scaffold_4_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12879..14051)
DNA (1173bp) protein (391aa)
Transporter gate domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIS6_9CLOT
Transporter gate domain protein {ECO:0000313|EMBL:EEA84045.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_114_360G1_scaffold_4_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14272..14889
DNA (618bp) protein (206aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FIS7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22368.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Domain of unknown function (DUF1836).
L3_114_360G1_scaffold_4_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14912..16042)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FIS8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA84047.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_114_360G1_scaffold_4_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16032..16334)
DNA (303bp) protein (101aa)
TrpR family protein YerC/YecD n=2 Tax=Clostridium RepID=B6FIS9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22370.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
TrpR-related protein YerC/YecD
L3_114_360G1_scaffold_4_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16396..17121)
DNA (726bp) protein (242aa)
PHP domain protein n=2 Tax=Clostridium RepID=B6FIT0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22371.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Histidinol phosphatase and related hydrolases of the PHP family
L3_114_360G1_scaffold_4_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17212..17412
DNA (201bp) protein (67aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FIT8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA84050.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_114_360G1_scaffold_4_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17496..18539
DNA (1044bp) protein (348aa)
NMT1/THI5-like protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIT9_9CLOT
NMT1/THI5-like protein {ECO:0000313|EMBL:EEA84051.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
L3_114_360G1_scaffold_4_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18608..19258)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PND7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22374.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_114_360G1_scaffold_4_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19278..21083)
DNA (1806bp) protein (602aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFK5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22375.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Alcohol acetyltransferase.
L3_114_360G1_scaffold_4_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21087..22004)
DNA (918bp) protein (306aa)
Hydrolase, alpha/beta domain protein n=2 Tax=Clostridium RepID=B6FIU2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22376.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
alpha/beta hydrolase
L3_114_360G1_scaffold_4_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22103..23494)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QK86_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22377.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Permeases
L3_114_360G1_scaffold_4_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23654..25276)
DNA (1623bp) protein (541aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIU4_9CLOT
L3_114_360G1_scaffold_4_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25305..25562)
DNA (258bp) protein (86aa)
Phosphocarrier, HPr family n=2 Tax=Clostridium RepID=B6FIU5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22379.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
phosphotransferase system, phosphocarrier protein HPr
L3_114_360G1_scaffold_4_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25629..27338)
DNA (1710bp) protein (570aa)
fruA; PTS system, fructose subfamily, IIA component domain protein (EC:2.7.1.69)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFL0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22380.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_114_360G1_scaffold_4_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27335..27553)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIU7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA84059.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_114_360G1_scaffold_4_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27566..28486)
DNA (921bp) protein (307aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
fructose-1-phosphate kinase (EC:2.7.1.56)
Tagatose-6-phosphate kinase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIU8_9CLOT
L3_114_360G1_scaffold_4_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28483..29235)
DNA (753bp) protein (251aa)
Transcriptional regulator, DeoR family n=2 Tax=Clostridium RepID=B6FIU9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22383.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
Displaying items 1-30 of 262 in total

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