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L3_114_360G1_scaffold_38

Search features with annotation key words

Displaying items 1-30 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_360G1_scaffold_38_1
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..366)
DNA (366bp) protein (122aa)
single-stranded DNA-binding protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0D90
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_114_360G1_scaffold_38_2
Viridibacillus arenosi, Viridibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

662..1270
DNA (609bp) protein (203aa)
phosphoglycerate mutase n=1 Tax=Butyrivibrio sp. AE3009 RepID=UPI0003B72AF3
Phosphoglycerate mutase {ECO:0000313|EMBL:ETT86219.1}; TaxID=1227360 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Viridibacillus.;" source="Viridibacillus arenosi FSL R5-213.;"
Phosphoglycerate mutase family 3
L3_114_360G1_scaffold_38_3
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1349..3556)
DNA (2208bp) protein (736aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JH42_CELLD
ATP-dependent DNA helicase RecQ
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:ADZ81857.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_114_360G1_scaffold_38_4
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3888..5249
DNA (1362bp) protein (454aa)
Putative efflux protein, MATE family n=1 Tax=Clostridium termitidis CT1112 RepID=S0FSI6_9CLOT
Putative efflux protein, MATE family {ECO:0000313|EMBL:EMS71458.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
MATE efflux family protein
L3_114_360G1_scaffold_38_5
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5331..5552)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JLS6_CELLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ84602.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_114_360G1_scaffold_38_6
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5606..6364)
DNA (759bp) protein (253aa)
Sirohydrochlorin cobaltochelatase {ECO:0000313|EMBL:CEN79385.1}; EC=4.99.1.3 {ECO:0000313|EMBL:CEN79385.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
Sirohydrochlorin cobaltochelatase n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0DV82_CLOSO
sirohydrochlorin cobaltochelatase
L3_114_360G1_scaffold_38_7
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6339..6929)
DNA (591bp) protein (197aa)
Precorrin-2 dehydrogenase {ECO:0000313|EMBL:CEP90921.1}; EC=1.3.1.76 {ECO:0000313|EMBL:CEP90921.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
Siroheme synthase, N-terminal domain protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CBC3_CLOSO
siroheme synthase
L3_114_360G1_scaffold_38_8
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7090..7584
DNA (495bp) protein (165aa)
RNA polymerase sigma factor n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JK94_CELLD
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_114_360G1_scaffold_38_9
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7589..8533
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JK95_CELLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ85610.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_114_360G1_scaffold_38_10
unknown

Not on your lists

8640..8957
DNA (318bp) protein (106aa)

This feature has no annotations

L3_114_360G1_scaffold_38_11
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8985..9908
DNA (924bp) protein (308aa)
Polysaccharide deacetylase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JQ73_CELLD
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ADZ82621.1}; Flags: Precursor;; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_114_360G1_scaffold_38_12
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9932..11326)
DNA (1395bp) protein (465aa)
BNR/Asp-box repeat protein n=2 Tax=Clostridiales RepID=A5KIV5_9FIRM
BNR/Asp-box repeat protein {ECO:0000313|EMBL:CCZ26820.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
G-D-S-L family lipolytic protein
L3_114_360G1_scaffold_38_13
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11354..11824)
DNA (471bp) protein (157aa)
Lipoprotein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MIY2_ALKOO
lipoprotein
Lipoprotein {ECO:0000313|EMBL:ABW19764.1}; Flags: Precursor;; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
L3_114_360G1_scaffold_38_14
unknown

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comp(11858..11971)
DNA (114bp) protein (38aa)

This feature has no annotations

L3_114_360G1_scaffold_38_15
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11968..13488)
DNA (1521bp) protein (507aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9W5A6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY98064.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
AraC family transcriptional regulator
L3_114_360G1_scaffold_38_16
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13478..15433)
DNA (1956bp) protein (652aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9W4Z5_9CLOT
HAMP domain-containing protein,histidine kinase,cache domain-containing protein
L3_114_360G1_scaffold_38_17
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15553..16944)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KFJ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN35075.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_114_360G1_scaffold_38_18
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17240..18139
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KFK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN35076.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
ABC transporter permease
L3_114_360G1_scaffold_38_19
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18150..19493
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KFK1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN35077.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
binding-protein-dependent transport system inner membrane protein
L3_114_360G1_scaffold_38_20
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(19624..20916)
DNA (1293bp) protein (431aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=702450 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Turicibacter.;" source="Turicibacter sanguinis PC909.;"
hemL; glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase n=2 Tax=Turicibacter RepID=D4W2E4_9FIRM
L3_114_360G1_scaffold_38_21
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21055..22014)
DNA (960bp) protein (320aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] hiranonis DSM 13275.;"
hemB; porphobilinogen synthase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G066_9FIRM
L3_114_360G1_scaffold_38_22
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22043..23536)
DNA (1494bp) protein (498aa)
Bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase {ECO:0000313|EMBL:CEP47559.1}; EC=2.1.1.107 {ECO:0000313|EMBL:CEP47559.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
uroporphyrinogen III synthase/methyltransferase (EC:2.1.1.107)
Uroporphyrinogen-III C-methyltransferase n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0DPT6_CLOSO
L3_114_360G1_scaffold_38_23
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23550..24455)
DNA (906bp) protein (302aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase n=2 Tax=Clostridiales RepID=B0A9A3_9FIRM
L3_114_360G1_scaffold_38_24
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24886..26118)
DNA (1233bp) protein (411aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
Glutamyl-tRNA reductase n=2 Tax=Clostridium sordellii RepID=T0CKR1_CLOSO
hemA; glutamyl-tRNA reductase
L3_114_360G1_scaffold_38_25
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(26278..27327)
DNA (1050bp) protein (350aa)
Sulfite reductase, subunit C n=1 Tax=Coprobacillus sp. 8_2_54BFAA RepID=H1ANG2_9FIRM
Sulfite reductase, subunit C {ECO:0000313|EMBL:EHQ45810.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
anaerobic sulfite reductase subunit C
L3_114_360G1_scaffold_38_26
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27339..28133)
DNA (795bp) protein (265aa)
Sulfite reductase, subunit B n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XQM3_9CLOT
asrB; sulfite reductase, subunit B
Sulfite reductase, subunit B {ECO:0000313|EMBL:AIY82618.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_114_360G1_scaffold_38_27
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28126..29175)
DNA (1050bp) protein (350aa)
Anaerobic sulfite reductase, A subunit n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1V137_CLOPF
Sulfite reductase subunit A {ECO:0000313|EMBL:KJU71204.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
asrA; sulfite reductase, subunit A
L3_114_360G1_scaffold_38_28
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29354..30247)
DNA (894bp) protein (298aa)
Transcription regulators, LysR family n=1 Tax=Clostridium novyi (strain NT) RepID=A0Q1B5_CLONN
LysR family transcriptional regulator
Transcription regulators, LysR family {ECO:0000313|EMBL:ABK60709.1}; TaxID=386415 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi (strain NT).;"
L3_114_360G1_scaffold_38_29
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30579..31607)
DNA (1029bp) protein (343aa)
A/G-specific adenine glycosylase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JGV9_CELLD
A/G-specific adenine glycosylase
A/G-specific adenine glycosylase {ECO:0000313|EMBL:ADZ85299.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_114_360G1_scaffold_38_30
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31653..32033)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JJM2_CELLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ82064.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Displaying items 1-30 of 143 in total

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