ggKbase home page

L3_114_360G1_scaffold_74

Search features with annotation key words

Displaying items 1-30 of 114 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_360G1_scaffold_74_1
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(189..593)
DNA (405bp) protein (135aa)
Putative uncharacterized protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V0B7_CLOBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EES50951.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L3_114_360G1_scaffold_74_2
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(613..1317)
DNA (705bp) protein (235aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=R0AG76_CLOBU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJZ84431.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
L3_114_360G1_scaffold_74_3
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1747..2424)
DNA (678bp) protein (226aa)
Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UAD7_9CLOT
Competence protein ComEA-like protein with helix-hairpin-helix repeat region {ECO:0000313|EMBL:EKQ55129.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
helix-hairpin-helix repeat-containing competence protein ComEA
L3_114_360G1_scaffold_74_4
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2583..3818
DNA (1236bp) protein (412aa)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T5Z8_9CLOT
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:EKQ55128.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
Serine-type D-Ala-D-Ala carboxypeptidase
L3_114_360G1_scaffold_74_5
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3874..5025)
DNA (1152bp) protein (384aa)
Aspartate-semialdehyde dehydrogenase n=2 Tax=Clostridium butyricum RepID=M8KEX6_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ96007.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
aspartate-semialdehyde dehydrogenase
L3_114_360G1_scaffold_74_6
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5090..6055
DNA (966bp) protein (322aa)
Transcriptional regulator, LysR family n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LQS5_CLOB8
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABR32705.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_114_360G1_scaffold_74_7
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6077..6370
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0P8V4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQB86288.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
acetyltransferase, GNAT family
L3_114_360G1_scaffold_74_8
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6473..7375)
DNA (903bp) protein (301aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
Pseudouridine synthase, RluA family n=1 Tax=Clostridium sp. DL-VIII RepID=G7M9D2_9CLOT
RluA family pseudouridine synthase
L3_114_360G1_scaffold_74_9
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7390..8640)
DNA (1251bp) protein (417aa)
Cell envelope-related transcriptional attenuator n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LQS3_CLOB8
cell envelope-related transcriptional attenuator
Cell envelope-related transcriptional attenuator {ECO:0000313|EMBL:AJG97222.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
L3_114_360G1_scaffold_74_10
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8718..9290)
DNA (573bp) protein (191aa)
Putative HD superfamily hydrolase of NAD metabolism n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLH4_CLOSA
putative HD superfamily hydrolase of NAD metabolism
Putative HD superfamily hydrolase of NAD metabolism {ECO:0000313|EMBL:AGX41659.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_114_360G1_scaffold_74_11
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9341..9970)
DNA (630bp) protein (210aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
Probable nicotinate-nucleotide adenylyltransferase n=2 Tax=Clostridium RepID=NADD_CLOB8
nadD; nicotinic acid mononucleotide adenylyltransferase
L3_114_360G1_scaffold_74_12
unknown

Not on your lists

10172..10327
DNA (156bp) protein (52aa)

This feature has no annotations

L3_114_360G1_scaffold_74_13
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10638..10940)
DNA (303bp) protein (101aa)
RNA-binding protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G4S4_CLOPA
RNA-binding protein {ECO:0000313|EMBL:ETD71101.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
hypothetical protein
L3_114_360G1_scaffold_74_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11061..12404)
DNA (1344bp) protein (448aa)
GTPase Obg n=4 Tax=Clostridium butyricum RepID=B1R1B0_CLOBU
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454, ECO:0000256|SAAS:SAAS00043060}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
obg; GTPase Obg
L3_114_360G1_scaffold_74_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13066..13365)
DNA (300bp) protein (100aa)
50S ribosomal protein L27 n=4 Tax=Clostridium butyricum RepID=B1R1A9_CLOBU
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
rpmA; 50S ribosomal protein L27
L3_114_360G1_scaffold_74_16
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13370..13756)
DNA (387bp) protein (129aa)
Putative ribosomal protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLG9_CLOSA
putative ribosomal protein
Putative ribosomal protein {ECO:0000313|EMBL:AGX41654.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_114_360G1_scaffold_74_17
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13761..14072)
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=2 Tax=Clostridium RepID=RL21_CLOB8
rplU; 50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000255|HAMAP-Rule:MF_01363}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_114_360G1_scaffold_74_18
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14206..15687)
DNA (1482bp) protein (494aa)
rng; ribonuclease G (EC:3.1.26.-)
Ribonuclease G {ECO:0000313|EMBL:AGX41652.1}; EC=3.1.26.- {ECO:0000313|EMBL:AGX41652.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Ribonuclease G n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MQE1_CLOSA
L3_114_360G1_scaffold_74_19
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15756..16481)
DNA (726bp) protein (242aa)
Radical SAM protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G5Z6_CLOPA
Radical SAM protein {ECO:0000313|EMBL:ETD71107.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
hypothetical protein
L3_114_360G1_scaffold_74_20
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16447..18303)
DNA (1857bp) protein (619aa)
Radical SAM domain protein n=4 Tax=Clostridium butyricum RepID=B1R1A4_CLOBU
Fe-S oxidoreductase {ECO:0000313|EMBL:KHD14481.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
radical SAM domain-containing methylthiotransferase
L3_114_360G1_scaffold_74_21
unknown

Not on your lists

comp(18529..18642)
DNA (114bp) protein (38aa)

This feature has no annotations

L3_114_360G1_scaffold_74_22
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18988..19836)
DNA (849bp) protein (283aa)
Peptidase M50 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MM13_CLOSA
peptidase M50
Peptidase M50 {ECO:0000313|EMBL:AGX41635.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_114_360G1_scaffold_74_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19875..20351)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AEE7_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ31149.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
L3_114_360G1_scaffold_74_24
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20679..21884)
DNA (1206bp) protein (402aa)
cell division protein FtsW n=1 Tax=Clostridium botulinum RepID=UPI0003776763
Rod shape-determining protein RodA {ECO:0000313|EMBL:AIY80178.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
stage V sporulation protein E
L3_114_360G1_scaffold_74_25
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22040..22309)
DNA (270bp) protein (90aa)
Cell division topological specificity factor n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TS11_9CLOT
minE; cell division topological specificity factor MinE
Cell division topological specificity factor {ECO:0000256|HAMAP-Rule:MF_00262, ECO:0000256|SAAS:SAAS00085645}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L3_114_360G1_scaffold_74_26
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22322..23119)
DNA (798bp) protein (266aa)
Septum site-determining protein MinD n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MPL5_CLOSA
minD; septum site-determining protein MinD
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_114_360G1_scaffold_74_27
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23141..23797)
DNA (657bp) protein (219aa)
Probable septum site-determining protein MinC n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T5X0_9CLOT
Probable septum site-determining protein MinC {ECO:0000256|HAMAP-Rule:MF_00267}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
minC; septum site-determining protein MinC
L3_114_360G1_scaffold_74_28
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23953..24636)
DNA (684bp) protein (228aa)
Sugar fermentation stimulation protein homolog n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLE5_CLOSA
sfsA; sugar fermentation stimulation protein
Sugar fermentation stimulation protein homolog {ECO:0000256|HAMAP-Rule:MF_00095}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_114_360G1_scaffold_74_29
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24766..27753)
DNA (2988bp) protein (996aa)
Penicillin-binding protein, transpeptidase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8J7H3_CLOBU
Penicillin-binding protein 2 (PBP-2) {ECO:0000313|EMBL:KJZ84416.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
penicillin-binding Protein dimerisation domain family
L3_114_360G1_scaffold_74_30
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27750..28247)
DNA (498bp) protein (166aa)
Rod shape-determining protein MreD n=2 Tax=Clostridium RepID=A6LQQ1_CLOB8
rod shape-determining protein MreD
Rod shape-determining protein MreD {ECO:0000313|EMBL:AJG97200.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
Displaying items 1-30 of 114 in total

View Taxonomy