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L3_114_360G1_scaffold_151

Search features with annotation key words

Displaying items 1-30 of 94 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_360G1_scaffold_151_1
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2..454
DNA (453bp) protein (151aa)
PTS system, mannose/fructose/sorbose family, IIB component n=7 Tax=Firmicutes RepID=E4LYI6_9CLOT
PTS system, mannose/fructose/sorbose family, IIB component {ECO:0000313|EMBL:ENY87840.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
agaB; PTS system N-acetylgalactosamine-specific IIB component
L3_114_360G1_scaffold_151_2
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

516..1337
DNA (822bp) protein (274aa)
PTS system sorbose-specific iic component n=7 Tax=Firmicutes RepID=E4LYI5_9CLOT
PTS system sorbose-specific iic component {ECO:0000313|EMBL:EFR36203.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
L3_114_360G1_scaffold_151_3
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

1327..2331
DNA (1005bp) protein (335aa)
PTS system mannose/fructose/sorbose family IID component n=5 Tax=Firmicutes RepID=E4LYI4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO31201.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
PTS system transporter subunit IID
L3_114_360G1_scaffold_151_4
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2453..3127
DNA (675bp) protein (225aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=E4LYI3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR36433.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_114_360G1_scaffold_151_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3316..3990)
DNA (675bp) protein (225aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LYI2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQJ49431.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_114_360G1_scaffold_151_6
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4175..5224)
DNA (1050bp) protein (350aa)
PTS system mannose/fructose/sorbose family IID component n=3 Tax=Firmicutes RepID=E4LYI1_9CLOT
PTS system mannose/fructose/sorbose family IID component {ECO:0000313|EMBL:EFR36464.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
PTS system transporter subunit IID
L3_114_360G1_scaffold_151_7
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5214..6035)
DNA (822bp) protein (274aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=G1VRT9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC87506.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
L3_114_360G1_scaffold_151_8
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

6161..7336
DNA (1176bp) protein (392aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1B1H8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO31206.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
integrase family protein
L3_114_360G1_scaffold_151_9
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(7585..8070)
DNA (486bp) protein (162aa)
Thioesterase family protein n=7 Tax=Firmicutes RepID=E4LYH8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY87832.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
thioesterase superfamily protein
L3_114_360G1_scaffold_151_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8135..8704)
DNA (570bp) protein (190aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=7 Tax=Firmicutes RepID=E4LYH7_9CLOT
L3_114_360G1_scaffold_151_11
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

8969..9982
DNA (1014bp) protein (338aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=5 Tax=Firmicutes RepID=E4LYH6_9CLOT
L3_114_360G1_scaffold_151_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10228..11352
DNA (1125bp) protein (375aa)
Diguanylate cyclase (GGDEF) domain protein n=5 Tax=Firmicutes RepID=E4LYH5_9CLOT
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQJ49423.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_114_360G1_scaffold_151_13
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11421..11609
DNA (189bp) protein (63aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LYH4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC87500.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L3_114_360G1_scaffold_151_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11890..13227
DNA (1338bp) protein (446aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Cysteine--tRNA ligase n=2 Tax=Firmicutes RepID=H1B1H2_9FIRM
cysteinyl-tRNA synthetase
L3_114_360G1_scaffold_151_15
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

13227..13613
DNA (387bp) protein (129aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
Mini-ribonuclease 3 n=7 Tax=Firmicutes RepID=E4LYH2_9CLOT
ribonuclease III
L3_114_360G1_scaffold_151_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13610..14332
DNA (723bp) protein (241aa)
RNA methyltransferase, TrmH family, group 3 n=5 Tax=Firmicutes RepID=E4LYH1_9CLOT
RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:EQJ49419.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
TrmH family RNA methyltransferase
L3_114_360G1_scaffold_151_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14365..14949
DNA (585bp) protein (195aa)
RNA polymerase sigma factor, sigma-70 family n=5 Tax=Firmicutes RepID=E4LYH0_9CLOT
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:EQJ49418.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
sigH; RNA polymerase factor sigma-70
L3_114_360G1_scaffold_151_18
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


15042..15191
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=8 Tax=Firmicutes RepID=E2SNZ7_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
rpmG; 50S ribosomal protein L33
L3_114_360G1_scaffold_151_19
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15203..15382
DNA (180bp) protein (60aa)
Preprotein translocase, SecE subunit n=7 Tax=Firmicutes RepID=E4LYG8_9CLOT
Preprotein translocase, SecE subunit {ECO:0000313|EMBL:ENY87822.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_114_360G1_scaffold_151_20
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15393..15944
DNA (552bp) protein (184aa)
Transcription termination/antitermination protein NusG n=5 Tax=Firmicutes RepID=E4LYG7_9CLOT
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
transcription antitermination protein NusG
L3_114_360G1_scaffold_151_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16204..16395
DNA (192bp) protein (64aa)
Uncharacterized protein n=6 Tax=Firmicutes RepID=E4LYG6_9CLOT
Putative membrane protein {ECO:0000313|EMBL:EQJ49413.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_114_360G1_scaffold_151_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16456..17220
DNA (765bp) protein (255aa)
TIGR01457 family HAD hydrolase n=3 Tax=Firmicutes RepID=H1B6J9_9FIRM
HAD hydrolase, IIA family protein {ECO:0000313|EMBL:EQJ49412.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
TIGR01457 family HAD hydrolase
L3_114_360G1_scaffold_151_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17324..18622
DNA (1299bp) protein (433aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Enolase n=1 Tax=Clostridium difficile P28 RepID=T4N155_CLODI
enolase
L3_114_360G1_scaffold_151_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19119..20954
DNA (1836bp) protein (612aa)
Amino acid permease family protein n=1 Tax=Clostridium difficile P28 RepID=T4N1U5_CLODI
Amino acid permease family protein {ECO:0000313|EMBL:EQJ49410.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
amino acid permease-associated region
L3_114_360G1_scaffold_151_25
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

21181..21411
DNA (231bp) protein (77aa)
Preprotein translocase, SecG subunit n=7 Tax=Firmicutes RepID=E4LYG2_9CLOT
Preprotein translocase SecG subunit {ECO:0000313|EMBL:CDC87488.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
secG; preprotein translocase subunit SecG
L3_114_360G1_scaffold_151_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21485..23617
DNA (2133bp) protein (711aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Ribonuclease R n=1 Tax=Clostridium difficile P28 RepID=T4MW97_CLODI
rnr; exoribonuclease R
L3_114_360G1_scaffold_151_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23635..24801
DNA (1167bp) protein (389aa)
Bacterial capsule synthesis PGA_cap family protein n=1 Tax=Clostridium difficile P28 RepID=T4N259_CLODI
Bacterial capsule synthesis PGA_cap family protein {ECO:0000313|EMBL:EQJ49407.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
capA; PGA biosynthesis protein CapA
L3_114_360G1_scaffold_151_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24816..25271
DNA (456bp) protein (152aa)
SsrA-binding protein n=7 Tax=Firmicutes RepID=E4LYF9_9CLOT
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
SsrA-binding protein
L3_114_360G1_scaffold_151_29
unknown

Not on your lists

26376..26636
DNA (261bp) protein (87aa)

This feature has no annotations

L3_114_360G1_scaffold_151_30
Eggerthella lenta, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

26782..27003
DNA (222bp) protein (74aa)
DNA binding domain protein, excisionase family n=1 Tax=Eggerthella sp. HGA1 RepID=F0HR02_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74196.1}; TaxID=742768 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella.;" source="Eggerthella lenta 1_1_60AFAA.;"
hypothetical protein
Displaying items 1-30 of 94 in total

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