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L3_114_360G1_scaffold_263

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Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_360G1_scaffold_263_1
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(495..1850)
DNA (1356bp) protein (452aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KQ87_9FIRM
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:ERJ94447.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_360G1_scaffold_263_2
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1984..2325)
DNA (342bp) protein (114aa)
Macrophage migration inhibitory factor family protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MKG3_9FIRM
Macrophage migration inhibitory factor family protein {ECO:0000313|EMBL:CDF01584.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
macrophage migration inhibitory factor family protein
L3_114_360G1_scaffold_263_3
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2340..3863)
DNA (1524bp) protein (508aa)
Coproporphyrinogen dehydrogenase HemZ n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LY74_9FIRM
Coproporphyrinogen dehydrogenase HemZ {ECO:0000313|EMBL:ERJ94444.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Radical SAM superfamily protein
L3_114_360G1_scaffold_263_4
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3867..4490)
DNA (624bp) protein (208aa)
Metallo-beta-lactamase domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M542_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:ERJ94443.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Zn-dependent hydrolases, including glyoxylases
L3_114_360G1_scaffold_263_5
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4501..6756)
DNA (2256bp) protein (752aa)
(p)ppGpp synthetase, RelA/SpoT family (EC:2.7.6.5)
Putative GTP diphosphokinase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KQ81_9FIRM
Putative GTP diphosphokinase {ECO:0000313|EMBL:ERJ94442.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_360G1_scaffold_263_6
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6753..8789)
DNA (2037bp) protein (679aa)
single-stranded-DNA-specific exonuclease RecJ (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K7F6_9FIRM
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:ERJ94441.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_360G1_scaffold_263_7
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9084..9518
DNA (435bp) protein (145aa)
Acyl-CoA thioester hydrolase, YbgC/YbaW family n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KQT0_9FIRM
Acyl-CoA thioester hydrolase, YbgC/YbaW family {ECO:0000313|EMBL:ERJ94440.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
thioesterase superfamily protein
L3_114_360G1_scaffold_263_8
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9589..10203)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K4X2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ87322.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_360G1_scaffold_263_9
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10200..11006)
DNA (807bp) protein (269aa)
Hydrolase, carbon-nitrogen family n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M535_9FIRM
Hydrolase, carbon-nitrogen family {ECO:0000313|EMBL:ERJ94438.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
L3_114_360G1_scaffold_263_10
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11020..12558)
DNA (1539bp) protein (513aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KQ75_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:ERJ94437.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_360G1_scaffold_263_11
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12865..13575
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K7F2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ94436.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_360G1_scaffold_263_12
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13640..14410)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KQS5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ94435.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Predicted membrane protein
L3_114_360G1_scaffold_263_13
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14437..15144)
DNA (708bp) protein (236aa)
FCD domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LY64_9FIRM
FCD domain protein {ECO:0000313|EMBL:ERJ94434.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
regulatory protein GntR HTH
L3_114_360G1_scaffold_263_14
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15512..16036
DNA (525bp) protein (175aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KQ70_9FIRM
L3_114_360G1_scaffold_263_15
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16117..16293)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LCX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ87334.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_360G1_scaffold_263_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16290..17720)
DNA (1431bp) protein (477aa)
precorrin-4 C(11)-methyltransferase (EC:4.99.1.3 2.1.1.133)
Siroheme synthase domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LJP3_9FIRM
Siroheme synthase domain protein {ECO:0000313|EMBL:ERJ87333.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_360G1_scaffold_263_17
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17724..19208)
DNA (1485bp) protein (495aa)
Uroporphyrinogen-III C-methyltransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K4Y0_9FIRM
Uroporphyrinogen-III C-methyltransferase {ECO:0000313|EMBL:ERJ87332.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
porphobilinogen deaminase
L3_114_360G1_scaffold_263_18
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19221..20063)
DNA (843bp) protein (281aa)
Cobalt ABC transporter, ATP-binding protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JM37_9FIRM
Cobalt ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERJ87331.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
cobalt ABC transporter ATPase
L3_114_360G1_scaffold_263_19
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20048..20881)
DNA (834bp) protein (278aa)
Cobalt ABC transporter, permease protein CbiQ n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K5D1_9FIRM
Cobalt ABC transporter, permease protein CbiQ {ECO:0000313|EMBL:ERJ87330.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
cobalt ABC transporter permease CbiQ
L3_114_360G1_scaffold_263_20
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20897..22030)
DNA (1134bp) protein (378aa)
Cobalamin biosynthesis protein CbiM n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LCX3_9FIRM
Cobalamin biosynthesis protein CbiM {ECO:0000313|EMBL:ERJ87329.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
cobalamin biosynthesis protein CbiM
L3_114_360G1_scaffold_263_21
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22094..23398)
DNA (1305bp) protein (435aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LJN9_9FIRM
glutamate-1-semialdehyde aminotransferase
L3_114_360G1_scaffold_263_22
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23398..24381)
DNA (984bp) protein (328aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
delta-aminolevulinic acid dehydratase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FIF6_9FIRM
L3_114_360G1_scaffold_263_23
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24378..25268)
DNA (891bp) protein (297aa)
Hydroxymethylbilane synthase {ECO:0000256|SAAS:SAAS00018413}; EC=2.5.1.61 {ECO:0000256|SAAS:SAAS00018413};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Hydroxymethylbilane synthase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JM31_9FIRM
L3_114_360G1_scaffold_263_24
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25265..26503)
DNA (1239bp) protein (413aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K5C6_9FIRM
L3_114_360G1_scaffold_263_25
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26512..27105)
DNA (594bp) protein (198aa)
Phosphoglycerate mutase family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LCW8_9FIRM
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:ERJ87324.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
alpha-ribazole phosphatase
L3_114_360G1_scaffold_263_26
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27598..28227)
DNA (630bp) protein (210aa)
Precorrin isomerase (EC:5.4.1.2)
Putative precorrin-8X methylmutase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LPV7_9FIRM
Putative precorrin-8X methylmutase {ECO:0000313|EMBL:ERJ89158.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_360G1_scaffold_263_27
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28208..28978)
DNA (771bp) protein (257aa)
Precorrin-6A reductase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KA74_9FIRM
Precorrin-6A reductase {ECO:0000313|EMBL:ERJ89157.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
precorrin-6x reductase
L3_114_360G1_scaffold_263_28
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28975..29676)
DNA (702bp) protein (234aa)
precorrin-3 methyltransferase (EC:2.1.1.131)
Precorrin-3B C(17)-methyltransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JSB9_9FIRM
Precorrin-3B C(17)-methyltransferase {ECO:0000313|EMBL:ERJ89156.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_360G1_scaffold_263_29
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29724..30734)
DNA (1011bp) protein (337aa)
CbiG protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KAN6_9FIRM
CbiG protein {ECO:0000313|EMBL:ERJ89155.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Cobalamin synthesis G-like
L3_114_360G1_scaffold_263_30
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30731..31486)
DNA (756bp) protein (252aa)
Precorrin-4 C(11)-methyltransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LI46_9FIRM
Precorrin-4 C(11)-methyltransferase {ECO:0000313|EMBL:ERJ89154.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
precorrin-4 C(11)-methyltransferase
Displaying items 1-30 of 60 in total

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