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L3_114_360G1_scaffold_402

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_360G1_scaffold_402_1
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..255
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H6D5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE34846.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
L3_114_360G1_scaffold_402_2
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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252..1778
DNA (1527bp) protein (509aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H5B0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE34844.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
collagen triple helix repeat-containing protein
L3_114_360G1_scaffold_402_3
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1783..2226
DNA (444bp) protein (148aa)
Toxin secretion/phage lysis holin n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K757_9FIRM
Toxin secretion/phage lysis holin {ECO:0000313|EMBL:ERJ88087.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
toxin secretion/phage lysis holin
L3_114_360G1_scaffold_402_4
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2228..3238
DNA (1011bp) protein (337aa)
N-acetylmuramoyl-L-alanine amidase family protein (EC:3.2.1.96)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H779_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDE34823.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
L3_114_360G1_scaffold_402_5
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3249..3440
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDY4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ90320.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_360G1_scaffold_402_6
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3471..5024
DNA (1554bp) protein (518aa)
Resolvase protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LLD6_9FIRM
Resolvase protein {ECO:0000313|EMBL:ERJ90319.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
phage integrase site specific recombinase
L3_114_360G1_scaffold_402_7
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5024..5446
DNA (423bp) protein (141aa)
Recombinase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LT49_9FIRM
Recombinase {ECO:0000313|EMBL:ERJ90318.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
phage integrase site specific recombinase
L3_114_360G1_scaffold_402_8
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5454..7010
DNA (1557bp) protein (519aa)
Resolvase protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDH4_9FIRM
Resolvase protein {ECO:0000313|EMBL:ERJ90317.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Resolvase domain-containing protein
L3_114_360G1_scaffold_402_9
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

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7224..8519
DNA (1296bp) protein (432aa)
Putative ATP-binding protein involved in virulence n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6CFF3_9FIRM
Putative ATP-binding protein involved in virulence {ECO:0000313|EMBL:CDA63962.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
SMC domain protein
L3_114_360G1_scaffold_402_10
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8516..9238
DNA (723bp) protein (241aa)
Putative uncharacterized protein n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DLX3_CLOSC
conserved hypothetical protein TIGR02646
Uncharacterized protein {ECO:0000313|EMBL:CBK78697.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_114_360G1_scaffold_402_11
unknown

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9619..9717
DNA (99bp) protein (33aa)

This feature has no annotations

L3_114_360G1_scaffold_402_12
unknown

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10342..11232
DNA (891bp) protein (297aa)

This feature has no annotations

L3_114_360G1_scaffold_402_13
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12198..12914
DNA (717bp) protein (239aa)
LytTr DNA-binding domain-containing protein n=2 Tax=Ruminococcus RepID=R7FC94_9FIRM
LytTr DNA-binding domain protein {ECO:0000313|EMBL:ERJ97474.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
LytTR family two component transcriptional regulator
L3_114_360G1_scaffold_402_14
Clostridium sporogenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12917..14200
DNA (1284bp) protein (428aa)
Putative uncharacterized protein n=1 Tax=Clostridium sporogenes PA 3679 RepID=G9EYB8_CLOSG
Putative uncharacterized protein {ECO:0000313|EMBL:EHN15895.1}; TaxID=1075091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sporogenes PA 3679.;"
hypothetical protein
L3_114_360G1_scaffold_402_15
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14378..16147
DNA (1770bp) protein (590aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LC73_RUMC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL17218.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_114_360G1_scaffold_402_16
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16162..17367
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C36EB1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL17216.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_114_360G1_scaffold_402_17
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17736..17930)
DNA (195bp) protein (65aa)
DNA binding domain, excisionase family n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LP64_9FIRM
DNA binding domain, excisionase family {ECO:0000313|EMBL:ERJ91289.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_360G1_scaffold_402_18
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17945..18574)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LVZ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ91288.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_360G1_scaffold_402_19
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18596..19387)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P6G2_9LACO
NACHT domain protein {ECO:0000313|EMBL:CDX03463.1}; TaxID=49338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (Desulfitobacterium frappieri).;"
L3_114_360G1_scaffold_402_20
unknown

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19852..20493
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B55BEE
L3_114_360G1_scaffold_402_21
Selenomonas noxia, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(20541..21995)
DNA (1455bp) protein (485aa)
Putative uncharacterized protein n=1 Tax=Selenomonas noxia F0398 RepID=G5H1V6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHG25155.1}; TaxID=702437 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas noxia F0398.;"
DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains
L3_114_360G1_scaffold_402_22
unknown

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comp(21982..22881)
DNA (900bp) protein (300aa)

This feature has no annotations

L3_114_360G1_scaffold_402_23
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22860..24140)
DNA (1281bp) protein (427aa)
DNA polymerase I (EC:2.7.7.7)
DNA-directed DNA polymerase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MBP1_9FIRM
DNA-directed DNA polymerase {ECO:0000313|EMBL:ERJ96718.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_360G1_scaffold_402_24
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24194..24919)
DNA (726bp) protein (242aa)
Phage antirepressor protein putative n=1 Tax=Clostridium sp. CAG:557 RepID=R6GS37_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EYE88004.1}; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervidicella.;" source="Fervidicella metallireducens AeB.;"
AntA/AntB antirepressor domain-containing protein
L3_114_360G1_scaffold_402_25
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24953..25519)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2A091_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EMZ19828.1}; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
Protein of unknown function (DUF2815)
L3_114_360G1_scaffold_402_26
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25516..26658)
DNA (1143bp) protein (381aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74405.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_114_360G1_scaffold_402_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26651..26941)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CRX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32058.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_114_360G1_scaffold_402_28
unknown

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comp(26947..27066)
DNA (120bp) protein (40aa)

This feature has no annotations

L3_114_360G1_scaffold_402_29
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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27291..27713
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KGQ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ91280.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_360G1_scaffold_402_30
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27710..29932
DNA (2223bp) protein (741aa)
Phage/plasmid primase, P4 family domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDX7_9FIRM
Phage/plasmid primase, P4 family domain protein {ECO:0000313|EMBL:ERJ96726.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
Displaying items 1-30 of 58 in total

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