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L3_114_360G1_scaffold_436

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_360G1_scaffold_436_1
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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232..1872
DNA (1641bp) protein (547aa)
metG2; methionine--tRNA ligase MetG (EC:6.1.1.10)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Methionine--tRNA ligase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MN78_CLOSA
L3_114_360G1_scaffold_436_2
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2309..3094
DNA (786bp) protein (262aa)
yabD; deoxyribonuclease YabD (EC:3.1.21.-)
Deoxyribonuclease YabD {ECO:0000313|EMBL:AGX41147.1}; EC=3.1.21.- {ECO:0000313|EMBL:AGX41147.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Deoxyribonuclease YabD n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNY4_CLOSA
L3_114_360G1_scaffold_436_3
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3354..4409
DNA (1056bp) protein (352aa)
3D domain-containing protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7LXF5_9CLOT
3D domain-containing protein {ECO:0000313|EMBL:EHI97033.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
3D domain-containing protein
L3_114_360G1_scaffold_436_4
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4566..5129
DNA (564bp) protein (188aa)
rnmV; ribonuclease M5 (EC:3.1.26.8)
Ribonuclease M5 {ECO:0000256|HAMAP-Rule:MF_01469}; EC=3.1.26.8 {ECO:0000256|HAMAP-Rule:MF_01469};; RNase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; Ribosomal RNA terminal maturase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Ribonuclease M5 n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1M7F7_9CLOT
L3_114_360G1_scaffold_436_5
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5130..5978
DNA (849bp) protein (283aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
16S rRNA methyltransferase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FT95_CLOPA
ksgA; dimethyladenosine transferase
L3_114_360G1_scaffold_436_6
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6059..7678
DNA (1620bp) protein (540aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=B1R1W7_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84691.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
L3_114_360G1_scaffold_436_7
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7696..8262
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNY8_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX41152.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_114_360G1_scaffold_436_8
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8367..9128
DNA (762bp) protein (254aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
Prolipoprotein diacylglyceryl transferase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FRK4_CLOPA
prolipoprotein diacylglyceryl transferase
L3_114_360G1_scaffold_436_9
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9125..9961
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FQ94_CLOPA
Uncharacterized protein {ECO:0000313|EMBL:ETD66021.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
hypothetical protein
L3_114_360G1_scaffold_436_10
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9982..10827
DNA (846bp) protein (282aa)
Protein Mrp n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKL8_CLOSA
mrp; protein Mrp
Protein Mrp {ECO:0000313|EMBL:AGX41155.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_114_360G1_scaffold_436_11
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10950..11144
DNA (195bp) protein (65aa)
Ferredoxin n=4 Tax=Clostridium butyricum RepID=B1R1W1_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ92353.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
ferredoxin
L3_114_360G1_scaffold_436_12
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11289..11975)
DNA (687bp) protein (229aa)
Proton-coupled thiamine transporter YuaJ n=1 Tax=Clostridium sp. DL-VIII RepID=G7LXG4_9CLOT
Proton-coupled thiamine transporter YuaJ {ECO:0000313|EMBL:EHI97042.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
putative proton-coupled thiamine transporter YuaJ
L3_114_360G1_scaffold_436_13
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12240..12446)
DNA (207bp) protein (69aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2THY3_CLOBB
Uncharacterized protein {ECO:0000313|EMBL:AIY82149.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
hypothetical protein
L3_114_360G1_scaffold_436_14
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12740..14848
DNA (2109bp) protein (703aa)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U528_9CLOT
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:EKQ56007.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
anaerobic ribonucleoside triphosphate reductase
L3_114_360G1_scaffold_436_15
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15183..16376
DNA (1194bp) protein (398aa)
leuA2; 2-isopropylmalate synthase 2 (EC:2.3.3.13)
2-isopropylmalate synthase 2 {ECO:0000313|EMBL:AGX41160.1}; EC=2.3.3.13 {ECO:0000313|EMBL:AGX41160.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
2-isopropylmalate synthase 2 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKM3_CLOSA
L3_114_360G1_scaffold_436_16
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16443..18365
DNA (1923bp) protein (641aa)
leuC2; 3-isopropylmalate dehydratase large subunit 1 (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit 1 {ECO:0000313|EMBL:AGX41161.1}; EC=4.2.1.33 {ECO:0000313|EMBL:AGX41161.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
3-isopropylmalate dehydratase large subunit 1 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MN91_CLOSA
L3_114_360G1_scaffold_436_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18676..19185
DNA (510bp) protein (170aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
anaerobic ribonucleoside-triphosphate reductase-activating protein (EC:1.97.1.-)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=2 Tax=Clostridium butyricum RepID=M8K9B5_CLOBU
L3_114_360G1_scaffold_436_18
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19188..20138
DNA (951bp) protein (317aa)
LacX protein n=2 Tax=Clostridium butyricum RepID=B1R1V3_CLOBU
Aldose 1-epimerase {ECO:0000313|EMBL:KJZ84714.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
lacX; protein LacX, chromosomal
L3_114_360G1_scaffold_436_19
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20375..20989
DNA (615bp) protein (205aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
Putative 3-methyladenine DNA glycosylase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T842_9CLOT
3-methyladenine DNA glycosylase
L3_114_360G1_scaffold_436_20
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21052..21459)
DNA (408bp) protein (136aa)
GtrA family protein n=2 Tax=Clostridium RepID=A6LWF7_CLOB8
GtrA family protein {ECO:0000313|EMBL:AJG99564.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
GtrA family protein
L3_114_360G1_scaffold_436_21
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21470..22435)
DNA (966bp) protein (322aa)
ykoT1; glycosyltransferase YkoT (EC:2.4.-.-)
Glycosyltransferase YkoT {ECO:0000313|EMBL:AGX41167.1}; EC=2.4.-.- {ECO:0000313|EMBL:AGX41167.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Glycosyltransferase YkoT n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP00_CLOSA
L3_114_360G1_scaffold_436_22
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22731..23204
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSW5_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX42527.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_114_360G1_scaffold_436_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23251..24645)
DNA (1395bp) protein (465aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
asnS; asparagine--tRNA ligase AsnS (EC:6.1.1.22)
Asparagine--tRNA ligase n=2 Tax=Clostridium butyricum RepID=B1R1V1_CLOBU
L3_114_360G1_scaffold_436_24
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24888..25586)
DNA (699bp) protein (233aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
Ser/threonine protein phosphatase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FP53_CLOPA
metallophosphoesterase
L3_114_360G1_scaffold_436_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26009..27085
DNA (1077bp) protein (359aa)
Proline dipeptidase n=4 Tax=Clostridium butyricum RepID=B1R1U9_CLOBU
Proline dipeptidase {ECO:0000313|EMBL:KHD15167.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
Xaa-Pro aminopeptidase
L3_114_360G1_scaffold_436_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27177..28556)
DNA (1380bp) protein (460aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
murC; UDP-N-acetylmuramate--L-alanine ligase MurC (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNA6_CLOSA
L3_114_360G1_scaffold_436_27
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28948..29763
DNA (816bp) protein (272aa)
Purine operon repressor, PurR n=1 Tax=Clostridium sp. DL-VIII RepID=G7LXH9_9CLOT
Purine operon repressor, PurR {ECO:0000313|EMBL:EHI97057.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
pur operon repressor
L3_114_360G1_scaffold_436_28
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30053..30328
DNA (276bp) protein (92aa)
Putative septation protein SpoVG n=1 Tax=Clostridium butyricum 60E.3 RepID=N9ZZD6_CLOBU
SpoVG family protein
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L3_114_360G1_scaffold_436_29
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30487..31857
DNA (1371bp) protein (457aa)
glmU: bifunctional protein GlmU (EC:2.7.7.23 2.3.1.157)
Bifunctional protein GlmU n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MK35_CLOSA
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_114_360G1_scaffold_436_30
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31907..32872
DNA (966bp) protein (322aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
Ribose-phosphate pyrophosphokinase n=2 Tax=Clostridium RepID=A6LPJ2_CLOB8
ribose-phosphate pyrophosphokinase
Displaying items 1-30 of 44 in total

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