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L3_114_360G1_scaffold_439

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_360G1_scaffold_439_1
unknown

Not on your lists

comp(2..64)
DNA (63bp) protein (21aa)

This feature has no annotations

L3_114_360G1_scaffold_439_2
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(372..650)
DNA (279bp) protein (93aa)
Mor transcription activator family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VPZ4_CLOBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKA67911.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
L3_114_360G1_scaffold_439_3
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1169..1999)
DNA (831bp) protein (277aa)
Urease accessory protein UreD n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QAG4_9CLOT
Urease accessory protein UreD {ECO:0000256|HAMAP-Rule:MF_01384}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
ureD; urease accessory protein UreD
L3_114_360G1_scaffold_439_4
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2001..2612)
DNA (612bp) protein (204aa)
Urease accessory protein UreG n=1 Tax=Clostridium colicanis 209318 RepID=N9WJJ2_9CLOT
Urease accessory protein UreG {ECO:0000256|HAMAP-Rule:MF_01389}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
ureG; Urease accessory protein UreG
L3_114_360G1_scaffold_439_5
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2631..3332)
DNA (702bp) protein (234aa)
Urease accessory protein UreF n=1 Tax=Clostridium sp. CAG:221 RepID=R6G5Y7_9CLOT
Urease accessory protein UreF {ECO:0000256|HAMAP-Rule:MF_01385}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
ureF; Urease accessory protein UreF
L3_114_360G1_scaffold_439_6
Bacillus coagulans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3313..3759)
DNA (447bp) protein (149aa)
Urease accessory protein UreE n=1 Tax=Bacillus coagulans (strain 2-6) RepID=F7Z6I8_BACC6
UreE urease accessory domain-containing protein
Urease accessory protein UreE {ECO:0000256|HAMAP-Rule:MF_00822, ECO:0000256|SAAS:SAAS00072411}; TaxID=1121088 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus coagulans DSM 1 = ATCC 7050.;"
L3_114_360G1_scaffold_439_7
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3796..5511)
DNA (1716bp) protein (572aa)
Urease subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01953, ECO:0000256|SAAS:SAAS00033844};; Urea amidohydrolase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; TaxID=1501230 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MSt1.;"
ureC; urease subunit alpha (EC:3.5.1.5)
urease subunit alpha n=1 Tax=Paenibacillus elgii RepID=UPI000248D6C3
L3_114_360G1_scaffold_439_8
Lysinibacillus manganicus, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5513..5833)
DNA (321bp) protein (107aa)
ureB; urease subunit beta (EC:3.5.1.5)
Urease subunit beta {ECO:0000256|HAMAP-Rule:MF_01954}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01954};; Urea amidohydrolase subunit beta {ECO:0000256|HAMAP-Rule:MF_01954}; TaxID=1384049 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus manganicus DSM 26584.;"
Urease subunit beta n=1 Tax=Bacillus coagulans (strain 2-6) RepID=F7Z6J0_BACC6
L3_114_360G1_scaffold_439_9
Spongiibacter sp. IMCC21906, Spongiibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5845..6147)
DNA (303bp) protein (101aa)
Urease, gamma subunit {ECO:0000313|EMBL:AKH67889.1}; EC=3.5.1.5 {ECO:0000313|EMBL:AKH67889.1};; TaxID=1620392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Spongiibacter.;" source="Spongiibacter sp. IMCC21906.;"
urease subunit gamma n=1 Tax=Halomonas sp. BJGMM-B45 RepID=UPI0003AEE073
urease subunit gamma
L3_114_360G1_scaffold_439_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6338..7111)
DNA (774bp) protein (258aa)
Iron chelate uptake ABC transporter, FeCT family, ATP-binding protein n=3 Tax=Clostridium botulinum RepID=B2UZP3_CLOBA
iron chelate uptake ABC transporter, FeCT family, ATP-binding protein
Iron chelate uptake ABC transporter, FeCT family, ATP-binding protein {ECO:0000313|EMBL:EES49681.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L3_114_360G1_scaffold_439_11
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7111..8181)
DNA (1071bp) protein (357aa)
Fe uptake system integral membrane protein n=2 Tax=Clostridium botulinum RepID=B2UZP2_CLOBA
Fe uptake system integral membrane protein
Iron ABC transporter permease {ECO:0000313|EMBL:KIL09626.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L3_114_360G1_scaffold_439_12
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8162..9169)
DNA (1008bp) protein (336aa)
Putative iron chelate uptake ABC transporter, solute-binding protein n=2 Tax=Clostridium botulinum B RepID=B2TJT4_CLOBB
Periplasmic binding family protein {ECO:0000313|EMBL:AIY80858.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
iron chelate uptake ABC transporter solute-binding protein
L3_114_360G1_scaffold_439_13
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9511..10383)
DNA (873bp) protein (291aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LYI3_CLOCD
Right origin-binding protein {ECO:0000313|EMBL:GAE90500.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
DNA-binding domain-containing protein
L3_114_360G1_scaffold_439_14
Paenibacillus sp. FSL H8-237, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10822..12012)
DNA (1191bp) protein (397aa)
Bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase protein {ECO:0000313|EMBL:ETT47130.1}; EC=3.1.4.16 {ECO:0000313|EMBL:ETT47130.1};; TaxID=1227350 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H8-237.;"
S-layer domain-containing protein n=1 Tax=Paenibacillus mucilaginosus (strain KNP414) RepID=F8FK07_PAEMK
2', 3'-cyclic nucleotide 2'-phosphodiesterase
L3_114_360G1_scaffold_439_15
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11999..17077)
DNA (5079bp) protein (1693aa)
Fibronectin type III domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NTE6_9FIRM
Fibronectin type III domain protein {ECO:0000313|EMBL:EDN00708.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
fibronectin type III domain protein
L3_114_360G1_scaffold_439_16
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17381..18268)
DNA (888bp) protein (296aa)
LysR substrate binding domain protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVQ4_CLOSA
LysR substrate binding domain protein
LysR substrate binding domain protein {ECO:0000313|EMBL:AGX43507.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_114_360G1_scaffold_439_17
Lactococcus piscium, Lactococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18329..18607)
DNA (279bp) protein (93aa)
Hydrolase, NUDIX family n=2 Tax=Clostridium perfringens RepID=Q0SUY8_CLOPS
NADH pyrophosphatase {ECO:0000313|EMBL:CEN28442.1}; TaxID=297352 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus.;" source="Lactococcus piscium MKFS47.;"
NUDIX domain-containing protein
L3_114_360G1_scaffold_439_18
Lachnospiraceae bacterium TWA4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18604..19098)
DNA (495bp) protein (165aa)
Collagenase and related proteases (EC:3.4.-.-)
Peptidase, U32 family n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FQN6_9FIRM
TWA4_scaffold00001, whole genome shotgun sequence {ECO:0000313|EMBL:KIR03093.1}; TaxID=1392836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium TWA4.;"
L3_114_360G1_scaffold_439_19
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19104..19805)
DNA (702bp) protein (234aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7ABK0_9FIRM
L3_114_360G1_scaffold_439_20
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19847..20188)
DNA (342bp) protein (114aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W1C4_9CLOT
L3_114_360G1_scaffold_439_21
Lachnoanaerobaculum sp. MSX33, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20414..21058
DNA (645bp) protein (215aa)
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase {ECO:0000313|EMBL:ETO98923.1}; EC=4.1.2.14 {ECO:0000313|EMBL:ETO98923.1};; EC=4.1.3.16 {ECO:0000313|EMBL:ETO98923.1};; TaxID=936596 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. MSX33.;"
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase n=1 Tax=Lachnospiraceae bacterium ICM7 RepID=J4K7N0_9FIRM
2-dehydro-3-deoxyphosphogluconate aldolase
L3_114_360G1_scaffold_439_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21333..22082)
DNA (750bp) protein (250aa)
Integrase core domain protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQN7_9FIRM
Integrase core domain protein {ECO:0000313|EMBL:EDY32464.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
putative transposase OrfB
L3_114_360G1_scaffold_439_23
Clostridium sp. CAG:433, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22222..23163)
DNA (942bp) protein (314aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1262806 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:433.;"
putative methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Clostridium sp. CAG:433 RepID=R6ZGA0_9CLOT
L3_114_360G1_scaffold_439_24
Mycoplasma penetrans, Mycoplasma, Mycoplasmatales, Mollicutes, Tenericutes, Bacteria

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comp(23648..24193)
DNA (546bp) protein (182aa)
Transcriptional regulator AcrR family n=1 Tax=Mycoplasma penetrans (strain HF-2) RepID=Q8EVP6_MYCPE
AcrR family transcriptional regulator
Transcriptional regulator AcrR family {ECO:0000313|EMBL:BAC44304.1}; TaxID=272633 species="Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma.;" source="Mycoplasma penetrans (strain HF-2).;"
L3_114_360G1_scaffold_439_25
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24316..25095
DNA (780bp) protein (260aa)
4Fe-4S ferredoxin n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EQ55_CLOPA
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein {ECO:0000313|EMBL:AJH00652.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
4Fe-4S ferredoxin
L3_114_360G1_scaffold_439_26
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25192..25671)
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JM15_CELLD
hypothetical protein
L3_114_360G1_scaffold_439_27
unknown

Not on your lists

comp(25745..25885)
DNA (141bp) protein (47aa)

This feature has no annotations

L3_114_360G1_scaffold_439_28
unknown

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comp(25845..26027)
DNA (183bp) protein (61aa)

This feature has no annotations

L3_114_360G1_scaffold_439_29
unknown

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comp(26201..26491)
DNA (291bp) protein (97aa)

This feature has no annotations

L3_114_360G1_scaffold_439_30
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26563..27450)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M5Y3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHJ00401.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
putative permease
Displaying items 1-30 of 47 in total

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