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L3_114_360G1_scaffold_448

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_360G1_scaffold_448_1
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(1..774)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Treponema socranskii subsp. paredis ATCC 35535 RepID=S3K410_TRESO
Uncharacterized protein {ECO:0000313|EMBL:EPF26782.1}; TaxID=1125701 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. paredis ATCC 35535.;"
radical SAM protein
L3_114_360G1_scaffold_448_2
Lachnospiraceae oral taxon 107, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(762..959)
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae oral taxon 107 str. F0167 RepID=F3B336_9FIRM
Bacteriophage protein gp37
Uncharacterized protein {ECO:0000313|EMBL:EGG92495.1}; TaxID=575593 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae oral taxon 107 str. F0167.;"
L3_114_360G1_scaffold_448_3
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1026..1898)
DNA (873bp) protein (291aa)
NAD-dependent protein deacetylases, SIR2 family n=1 Tax=Coprococcus catus GD/7 RepID=D4JAB7_9FIRM
NAD-dependent protein deacetylases, SIR2 family
NAD-dependent protein deacetylases, SIR2 family {ECO:0000313|EMBL:CBK81288.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L3_114_360G1_scaffold_448_4
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1879..2205)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI0003710771
Uncharacterized protein {ECO:0000313|EMBL:EFC95200.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
hypothetical protein
L3_114_360G1_scaffold_448_5
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2300..2482)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZR51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM88058.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
hypothetical protein
L3_114_360G1_scaffold_448_6
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2469..3350)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NU60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN00407.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
NAD-dependent protein deacetylases, SIR2 family
L3_114_360G1_scaffold_448_7
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3619..4209)
DNA (591bp) protein (197aa)
cell wall integrity and stress response component 3 n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0003184A1C
Uncharacterized protein {ECO:0000313|EMBL:EDM86831.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
hypothetical protein
L3_114_360G1_scaffold_448_8
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4206..6662)
DNA (2457bp) protein (819aa)
Beta-glucosidase-related glycosidases {ECO:0000313|EMBL:CBL23364.1}; EC=3.2.1.21 {ECO:0000313|EMBL:CBL23364.1};; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
Beta-glucosidase-related glycosidases n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LRF6_9FIRM
L3_114_360G1_scaffold_448_9
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6671..9532)
DNA (2862bp) protein (954aa)
Beta-glucosidase-related glycosidases {ECO:0000313|EMBL:CBL23363.1}; EC=3.2.1.21 {ECO:0000313|EMBL:CBL23363.1};; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
beta-glucosidase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002E63B5C
L3_114_360G1_scaffold_448_10
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9666..10973)
DNA (1308bp) protein (436aa)
histidine kinase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000370F1FA
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
Putative sensor histidine kinase VirS {ECO:0000313|EMBL:EDM86828.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L3_114_360G1_scaffold_448_11
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10997..11701)
DNA (705bp) protein (235aa)
LytTR family transcriptional regulator n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00030B6402
LytTr DNA-binding domain protein {ECO:0000313|EMBL:EDM86827.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
Response regulator of the LytR/AlgR family
L3_114_360G1_scaffold_448_12
unknown

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comp(11848..12024)
DNA (177bp) protein (59aa)

This feature has no annotations

L3_114_360G1_scaffold_448_13
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12138..12908)
DNA (771bp) protein (257aa)
carbon monoxide dehydrogenase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002F70A84
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:EDM86822.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
CO dehydrogenase maturation factor
L3_114_360G1_scaffold_448_14
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13077..13724
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00037BF7DB
Transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:EDM86821.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L3_114_360G1_scaffold_448_15
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13646..14272)
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LPV0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL18601.1}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L3_114_360G1_scaffold_448_16
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

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14595..15044
DNA (450bp) protein (150aa)
Transcriptional regulator BadM/Rrf2 family n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NGN1_9FIRM
Transcriptional regulator BadM/Rrf2 family {ECO:0000313|EMBL:CDC11313.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
transcriptional regulator, BadM/Rrf2 family
L3_114_360G1_scaffold_448_17
unknown

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15073..15318
DNA (246bp) protein (82aa)

This feature has no annotations

L3_114_360G1_scaffold_448_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15307..16038)
DNA (732bp) protein (244aa)
thiamine diphosphokinase (EC:2.7.6.2)
Thiamine pyrophosphokinase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEL4_9FIRM
Thiamine pyrophosphokinase {ECO:0000313|EMBL:EES76635.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_114_360G1_scaffold_448_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16047..16718)
DNA (672bp) protein (224aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=2 Tax=Ruminococcus RepID=C6JEL3_9FIRM
L3_114_360G1_scaffold_448_20
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16721..17599)
DNA (879bp) protein (293aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEL2_9FIRM
L3_114_360G1_scaffold_448_21
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17603..19786)
DNA (2184bp) protein (728aa)
Serine/threonine protein kinase (EC:2.7.11.1)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CDH4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76010.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_114_360G1_scaffold_448_22
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19780..20526)
DNA (747bp) protein (249aa)
Serine/threonine protein phosphatase (EC:3.1.3.16)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CD34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76011.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_114_360G1_scaffold_448_23
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20528..21568)
DNA (1041bp) protein (347aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CE61_9FIRM
L3_114_360G1_scaffold_448_24
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21572..22924)
DNA (1353bp) protein (451aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ribosomal RNA small subunit methyltransferase RsmB (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEK8_9FIRM
L3_114_360G1_scaffold_448_25
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22917..23612)
DNA (696bp) protein (232aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JEK7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76014.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted Zn-dependent protease
L3_114_360G1_scaffold_448_26
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23617..24564)
DNA (948bp) protein (316aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEK6_9FIRM
L3_114_360G1_scaffold_448_27
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24572..25048)
DNA (477bp) protein (159aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=2 Tax=Ruminococcus RepID=C6JEK5_9FIRM
L3_114_360G1_scaffold_448_28
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25218..27437)
DNA (2220bp) protein (740aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
replication restart DNA helicase PriA (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CDI2_9FIRM
L3_114_360G1_scaffold_448_29
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27464..28921)
DNA (1458bp) protein (486aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEK3_9FIRM
L3_114_360G1_scaffold_448_30
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29218..31029)
DNA (1812bp) protein (604aa)
LPXTG-containing cell wall anchor protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEK2_9FIRM
LPXTG-containing cell wall anchor protein {ECO:0000313|EMBL:EES76623.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
conserved repeat domain
Displaying items 1-30 of 45 in total

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