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L3_114_360G1_scaffold_499

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Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_360G1_scaffold_499_1
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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453..746
DNA (294bp) protein (98aa)
30S ribosomal protein S6 n=7 Tax=Firmicutes RepID=E4LXE2_9CLOT
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
ribosomal protein S6
L3_114_360G1_scaffold_499_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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766..1242
DNA (477bp) protein (159aa)
Single-stranded DNA-binding protein n=7 Tax=Firmicutes RepID=E4LXE1_9CLOT
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
single-strand binding protein
L3_114_360G1_scaffold_499_3
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1263..1493
DNA (231bp) protein (77aa)
30S ribosomal protein S18 n=7 Tax=Firmicutes RepID=E4LXE0_9CLOT
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
SSU ribosomal protein S18P
L3_114_360G1_scaffold_499_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1570..2532
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4P2J7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ61924.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_114_360G1_scaffold_499_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2510..4507
DNA (1998bp) protein (666aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1AWY4_9FIRM
DHHA1 domain protein {ECO:0000313|EMBL:EQJ61923.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L3_114_360G1_scaffold_499_6
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4485..4931
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=7 Tax=Firmicutes RepID=E4LXD7_9CLOT
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
rplI; 50S ribosomal protein L9
L3_114_360G1_scaffold_499_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4940..6286
DNA (1347bp) protein (449aa)
Replicative DNA helicase {ECO:0000313|EMBL:EQJ61921.1}; EC=3.6.4.12 {ECO:0000313|EMBL:EQJ61921.1};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
primary replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=1 Tax=Clostridium difficile P28 RepID=T4P385_CLODI
L3_114_360G1_scaffold_499_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6414..7160
DNA (747bp) protein (249aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1AWY1_9FIRM
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:EQJ61920.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
metallo-beta-lactamase family protein
L3_114_360G1_scaffold_499_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7157..8245
DNA (1089bp) protein (363aa)
Trypsin n=2 Tax=Clostridiales RepID=E4LXD4_9CLOT
Trypsin family protein {ECO:0000313|EMBL:EQJ61919.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
serine protease
L3_114_360G1_scaffold_499_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8265..8618
DNA (354bp) protein (118aa)
Putative hydrolase protein n=1 Tax=Clostridium difficile P28 RepID=T4NWR9_CLODI
Putative hydrolase protein {ECO:0000313|EMBL:EQJ61918.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
putative phosphoesterase or phosphohydrolase
L3_114_360G1_scaffold_499_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8612..8851
DNA (240bp) protein (80aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=E4LXD2_9CLOT
Putative hydrolase protein {ECO:0000313|EMBL:EQJ61917.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
putative phosphoesterase or phosphohydrolase
L3_114_360G1_scaffold_499_12
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8879..9496
DNA (618bp) protein (206aa)
Transcriptional regulator, TetR family n=2 Tax=Clostridiales RepID=E4LXD1_9CLOT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EFR36586.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
TetR family transcriptional regulator
L3_114_360G1_scaffold_499_13
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(9574..10458)
DNA (885bp) protein (295aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=4 Tax=Firmicutes RepID=H1AWX7_9FIRM
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:EHO24243.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
hypothetical protein
L3_114_360G1_scaffold_499_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10758..11282
DNA (525bp) protein (175aa)
Putative hD domain protein n=1 Tax=Clostridium difficile P28 RepID=T4P2J1_CLODI
Putative hD domain protein {ECO:0000313|EMBL:EQJ61914.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
phosphohydrolase
L3_114_360G1_scaffold_499_15
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11279..11755
DNA (477bp) protein (159aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
Ribosomal RNA large subunit methyltransferase H n=7 Tax=Firmicutes RepID=E4LXC8_9CLOT
rRNA large subunit methyltransferase
L3_114_360G1_scaffold_499_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12003..14375
DNA (2373bp) protein (791aa)
FtsX-like permease family protein n=1 Tax=Clostridium difficile P28 RepID=T4P2U0_CLODI
FtsX-like permease family protein {ECO:0000313|EMBL:EQJ61912.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ABC transporter permease
L3_114_360G1_scaffold_499_17
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14389..15159
DNA (771bp) protein (257aa)
ABC transporter, ATP-binding protein n=9 Tax=Firmicutes RepID=E4LXC6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC85935.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
ABC transporter ATP-binding protein
L3_114_360G1_scaffold_499_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15166..15843
DNA (678bp) protein (226aa)
Response regulator receiver domain protein n=8 Tax=Firmicutes RepID=E4LXC5_9CLOT
Response regulator {ECO:0000313|EMBL:EQJ48546.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
transcriptional regulator
L3_114_360G1_scaffold_499_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15926..17104
DNA (1179bp) protein (393aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Uncharacterized protein n=2 Tax=Firmicutes RepID=R6UJI0_9FIRM
hypothetical protein
L3_114_360G1_scaffold_499_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17481..18212
DNA (732bp) protein (244aa)
Transcriptional regulator, MerR family n=5 Tax=Firmicutes RepID=E4LXC3_9CLOT
MerR regulatory family protein {ECO:0000313|EMBL:EQJ48543.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
transcriptional regulator, MerR family
L3_114_360G1_scaffold_499_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18855..19844
DNA (990bp) protein (330aa)
ABC transporter substrate binding protein n=4 Tax=Firmicutes RepID=E4LXC1_9CLOT
Periplasmic binding domain protein {ECO:0000313|EMBL:EQJ48540.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ABC-type uncharacterized transport system, periplasmic component
L3_114_360G1_scaffold_499_22
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20096..20968
DNA (873bp) protein (291aa)
Branched-chain amino acid ABC transporter, permease protein n=3 Tax=Firmicutes RepID=E4LXC0_9CLOT
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EFR36527.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
ABC-type uncharacterized transport system, permease component
L3_114_360G1_scaffold_499_23
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20961..21716
DNA (756bp) protein (252aa)
ABC transporter ATPase component (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=4 Tax=Firmicutes RepID=E4LXB9_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFR36554.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_114_360G1_scaffold_499_24
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22001..23137
DNA (1137bp) protein (379aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=5 Tax=Firmicutes RepID=E4LXB8_9CLOT
L3_114_360G1_scaffold_499_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23139..24254
DNA (1116bp) protein (372aa)
Glucose-1-phosphate adenylyltransferase, GlgD subunit {ECO:0000313|EMBL:EQJ48536.1}; EC=2.7.7.27 {ECO:0000313|EMBL:EQJ48536.1};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
glucose-1-phosphate adenylyltransferase, GlgD subunit (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase, GlgD subunit n=5 Tax=Firmicutes RepID=E4LXB7_9CLOT
L3_114_360G1_scaffold_499_26
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

24254..25693
DNA (1440bp) protein (480aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
Glycogen synthase n=4 Tax=Firmicutes RepID=G1VWP3_9FIRM
glycogen synthase
L3_114_360G1_scaffold_499_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26066..26569
DNA (504bp) protein (168aa)
agaB; Galactosamine-specific IIB component of PTS system (EC:2.7.1.69)
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1AWW0_9FIRM
Galactosamine-specific PTS system enzyme IIB component {ECO:0000313|EMBL:EQJ48533.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_114_360G1_scaffold_499_28
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26626..29358
DNA (2733bp) protein (911aa)
Sigma-54 interaction domain protein n=2 Tax=Clostridiales RepID=E4LXB4_9CLOT
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EFR36525.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
PTS system transcriptional activator
L3_114_360G1_scaffold_499_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29433..29900
DNA (468bp) protein (156aa)
PTS system, mannose/fructose/sorbose family, IIB component n=5 Tax=Firmicutes RepID=E4LXB3_9CLOT
Galactosamine-specific PTS system enzyme IIB component {ECO:0000313|EMBL:EQJ48531.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
PTS system N-acetylgalactosamine-specific transporter subunit IIB
L3_114_360G1_scaffold_499_30
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

29929..30732
DNA (804bp) protein (268aa)
N-acetylgalactosamine permease IIC component 1 n=7 Tax=Firmicutes RepID=E4LXB2_9CLOT
PTS system, mannose/fructose/sorbose family, IIC component {ECO:0000313|EMBL:EHO24144.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
PTS sorbose-specific transporter subunit IIC
Displaying items 1-30 of 44 in total

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