ggKbase home page

L3_114_360G1_scaffold_514

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_360G1_scaffold_514_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

736..3969
DNA (3234bp) protein (1078aa)
DEAD/DEAH box helicase family protein n=1 Tax=Clostridium difficile P28 RepID=T4NH63_CLODI
DEAD/DEAH box helicase family protein {ECO:0000313|EMBL:EQJ54602.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
SNF2-related protein
L3_114_360G1_scaffold_514_2
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

4575..6068
DNA (1494bp) protein (498aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1AVC8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC83557.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
pck; Phosphoenolpyruvate carboxykinase
L3_114_360G1_scaffold_514_3
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6093..6608
DNA (516bp) protein (172aa)
uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR n=5 Tax=Firmicutes RepID=E4LSY6_9CLOT
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_114_360G1_scaffold_514_4
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6618..7640
DNA (1023bp) protein (341aa)
Aminopeptidase, M42 family (EC:3.4.11.-)
M42 glutamyl aminopeptidase n=5 Tax=Firmicutes RepID=E4LSY7_9CLOT
M42 glutamyl aminopeptidase {ECO:0000313|EMBL:EFR38257.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_114_360G1_scaffold_514_5
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

7751..8404
DNA (654bp) protein (218aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=H1AVD1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC83551.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
hypothetical protein
L3_114_360G1_scaffold_514_6
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8631..10382
DNA (1752bp) protein (584aa)
Oligoendopeptidase, pepF/M3 family {ECO:0000313|EMBL:EFR38246.1}; EC=3.4.24.- {ECO:0000313|EMBL:EFR38246.1};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Oligoendopeptidase, pepF/M3 family n=5 Tax=Firmicutes RepID=E4LSY9_9CLOT
pepF/M3 family oligoendopeptidase
L3_114_360G1_scaffold_514_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10731..12245)
DNA (1515bp) protein (505aa)
Response regulator receiver domain protein n=5 Tax=Firmicutes RepID=E4LSZ0_9CLOT
Response regulator {ECO:0000313|EMBL:EQJ54591.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
two-component response regulator
L3_114_360G1_scaffold_514_8
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12238..13713)
DNA (1476bp) protein (492aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=6 Tax=Firmicutes RepID=E4LSZ1_9CLOT
two-component sensor histidine kinase
L3_114_360G1_scaffold_514_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13703..14677)
DNA (975bp) protein (325aa)
Uncharacterized protein n=6 Tax=Firmicutes RepID=E4LSZ2_9CLOT
Periplasmic binding domain protein {ECO:0000313|EMBL:EQJ54589.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_114_360G1_scaffold_514_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14983..16551)
DNA (1569bp) protein (523aa)
Diguanylate cyclase (GGDEF) domain protein n=3 Tax=Firmicutes RepID=E4LSZ3_9CLOT
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQJ54588.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_114_360G1_scaffold_514_11
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16772..18472)
DNA (1701bp) protein (567aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
Phosphoenolpyruvate-protein phosphotransferase n=5 Tax=Firmicutes RepID=E4LSZ4_9CLOT
ptsI; phosphoenolpyruvate-protein phosphotransferase
L3_114_360G1_scaffold_514_12
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(18789..18983)
DNA (195bp) protein (65aa)
Uncharacterized protein n=7 Tax=Firmicutes RepID=E4LSZ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY85943.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_114_360G1_scaffold_514_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18983..19966)
DNA (984bp) protein (328aa)
ABC transporter, ATP-binding protein n=6 Tax=Firmicutes RepID=E4LSZ6_9CLOT
Oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein {ECO:0000313|EMBL:EQJ54584.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
oppF; oligopeptide transporter subunit ; ATP-binding component of ABC superfamily
L3_114_360G1_scaffold_514_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19970..20968)
DNA (999bp) protein (333aa)
ABC transporter, ATP-binding protein n=5 Tax=Firmicutes RepID=E4LSZ7_9CLOT
Oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein {ECO:0000313|EMBL:EQJ54583.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
oligopeptide/dipeptide ABC transporter ATPase
L3_114_360G1_scaffold_514_15
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(20981..21895)
DNA (915bp) protein (305aa)
ABC transporter, permease protein n=7 Tax=Firmicutes RepID=E4LSZ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY85940.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
peptide ABC transporter permease
L3_114_360G1_scaffold_514_16
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(21907..22887)
DNA (981bp) protein (327aa)
ABC transporter, permease protein n=7 Tax=Firmicutes RepID=E4LSZ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY85939.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
appB; Oligopeptide transport system permease protein AppB
L3_114_360G1_scaffold_514_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23002..24702)
DNA (1701bp) protein (567aa)
Bacterial extracellular solute-binding s, 5 Middle family protein n=1 Tax=Clostridium difficile P28 RepID=T4NGM8_CLODI
Bacterial extracellular solute-binding s, 5 Middle family protein {ECO:0000313|EMBL:EQJ54580.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
OppA10; ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components
L3_114_360G1_scaffold_514_18
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(24998..26203)
DNA (1206bp) protein (402aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VKX1_9FIRM
PfkA; 6-phosphofructokinase
L3_114_360G1_scaffold_514_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26276..26626)
DNA (351bp) protein (117aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LT02_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQJ54578.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_114_360G1_scaffold_514_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26687..28105)
DNA (1419bp) protein (473aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LSG7_9CLOT
Spore germination protein AF {ECO:0000313|EMBL:EQJ54577.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
stage V sporulation protein AF
L3_114_360G1_scaffold_514_21
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28239..29306)
DNA (1068bp) protein (356aa)
Cell division protein FtsZ n=2 Tax=Clostridiales RepID=E4LSG8_9CLOT
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
cell division protein FtsZ
L3_114_360G1_scaffold_514_22
unknown

Not on your lists

comp(29293..29433)
DNA (141bp) protein (47aa)

This feature has no annotations

L3_114_360G1_scaffold_514_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29530..30528)
DNA (999bp) protein (333aa)
Oxidoreductase, FAD/FMN-binding protein n=4 Tax=Firmicutes RepID=E4LSG9_9CLOT
Flavin oxidoreductase/NADH oxidase {ECO:0000313|EMBL:EQJ54575.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
NADH:flavin oxidoreductase/NADH oxidase
L3_114_360G1_scaffold_514_24
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30545..32383)
DNA (1839bp) protein (613aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9X222_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY93802.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
ABC transporter ATP-binding protein
L3_114_360G1_scaffold_514_25
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32380..32976)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XDU3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY93801.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
hypothetical protein
L3_114_360G1_scaffold_514_26
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32927..33457)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9VSX6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY93800.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
hypothetical protein
L3_114_360G1_scaffold_514_27
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33509..34102)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9VTE8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY93799.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
L3_114_360G1_scaffold_514_28
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34161..34808)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XD40_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY93798.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
hypothetical protein
L3_114_360G1_scaffold_514_29
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34808..34999)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9X218_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY93797.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
L3_114_360G1_scaffold_514_30
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35003..35164)
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XDT9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY93796.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
Displaying items 1-30 of 39 in total

View Taxonomy