ggKbase home page

L3_114_360G1_scaffold_562

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_360G1_scaffold_562_1
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

3..614
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1BHL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO19963.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
L3_114_360G1_scaffold_562_2
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

1066..1374
DNA (309bp) protein (103aa)
Uncharacterized protein n=3 Tax=Erysipelotrichaceae RepID=H1AVF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO19962.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
L3_114_360G1_scaffold_562_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1460..1792
DNA (333bp) protein (111aa)
Helix-turn-helix family protein n=1 Tax=Clostridium difficile P28 RepID=T4NTA9_CLODI
Helix-turn-helix family protein {ECO:0000313|EMBL:EQJ60688.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_114_360G1_scaffold_562_4
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

2202..2525
DNA (324bp) protein (108aa)
DNA-binding helix-turn-helix protein n=7 Tax=Firmicutes RepID=E4LSH6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY86597.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L3_114_360G1_scaffold_562_5
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2581..3204)
DNA (624bp) protein (208aa)
Acetyltransferase, GNAT family n=2 Tax=Firmicutes RepID=E4LSH7_9CLOT
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EFR38166.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
N-acetyltransferase GCN5
L3_114_360G1_scaffold_562_6
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(3255..4637)
DNA (1383bp) protein (461aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
asnC; asparaginyl-tRNA ligase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Erysipelotrichaceae bacterium CAG:64 RepID=R6UZF5_9FIRM
L3_114_360G1_scaffold_562_7
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(4654..4827)
DNA (174bp) protein (58aa)
Uncharacterized protein n=6 Tax=Firmicutes RepID=G1VKV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC85465.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L3_114_360G1_scaffold_562_8
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(4882..5511)
DNA (630bp) protein (210aa)
Redox-sensing transcriptional repressor Rex n=6 Tax=Firmicutes RepID=G1VKV5_9FIRM
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
AT-rich DNA-binding protein
L3_114_360G1_scaffold_562_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5835..6011)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NZQ7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ60681.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_114_360G1_scaffold_562_10
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6018..6434)
DNA (417bp) protein (139aa)
Acetyltransferase, GNAT family n=7 Tax=Firmicutes RepID=E4LSH9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY86591.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L3_114_360G1_scaffold_562_11
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6484..6675)
DNA (192bp) protein (64aa)
Uncharacterized protein n=6 Tax=Firmicutes RepID=E4LSI0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY86590.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_114_360G1_scaffold_562_12
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6759..7487)
DNA (729bp) protein (243aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
dapG; aspartate kinase I (EC:2.7.2.4)
Aspartokinase n=7 Tax=Firmicutes RepID=E4LSI1_9CLOT
L3_114_360G1_scaffold_562_13
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7683..8357)
DNA (675bp) protein (225aa)
Putative N-acetylmannosamine-6-phosphate 2-epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; EC=5.1.3.9 {ECO:0000256|HAMAP-Rule:MF_01235};; ManNAc-6-P epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Putative N-acetylmannosamine-6-phosphate 2-epimerase n=7 Tax=Firmicutes RepID=E4LSI2_9CLOT
nanE; N-acetylmannosamine-6-phosphate 2-epimerase
L3_114_360G1_scaffold_562_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8574..9143)
DNA (570bp) protein (190aa)
NUDIX domain protein n=1 Tax=Clostridium difficile P28 RepID=T4NYT2_CLODI
NUDIX domain protein {ECO:0000313|EMBL:EQJ60675.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
NUDIX hydrolase
L3_114_360G1_scaffold_562_15
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(9143..10525)
DNA (1383bp) protein (461aa)
A/G-specific adenine glycosylase (EC:3.2.2.-)
A/G-specific adenine glycosylase n=2 Tax=Erysipelotrichaceae RepID=H1AVG5_9FIRM
A/G-specific adenine glycosylase {ECO:0000313|EMBL:CDC85458.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L3_114_360G1_scaffold_562_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10648..11571)
DNA (924bp) protein (308aa)
Cell division protein FtsX n=3 Tax=Firmicutes RepID=E4LSI6_9CLOT
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ftsX; cell division protein FtsX
L3_114_360G1_scaffold_562_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11833..12420)
DNA (588bp) protein (196aa)
BioY family protein n=5 Tax=Firmicutes RepID=E4LSI7_9CLOT
BioY family protein {ECO:0000313|EMBL:EQJ60670.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
BioY family protein
L3_114_360G1_scaffold_562_18
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12417..13370)
DNA (954bp) protein (318aa)
Biotin--[acetyl-CoA-carboxylase] ligase n=5 Tax=Firmicutes RepID=E4LSI8_9CLOT
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
birA; bifunctional biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase
L3_114_360G1_scaffold_562_19
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13768..15318)
DNA (1551bp) protein (517aa)
Peptidase, M23 family n=4 Tax=Firmicutes RepID=E4LSI9_9CLOT
Peptidase, M23 family {ECO:0000313|EMBL:EFR38251.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
peptidase, M23B family
L3_114_360G1_scaffold_562_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15481..16377)
DNA (897bp) protein (299aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1BHJ7_9FIRM
Bacterial regulatory helix-turn-helix s, AraC family protein {ECO:0000313|EMBL:EQJ60665.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
AraC family transcriptional regulator
L3_114_360G1_scaffold_562_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16469..17248)
DNA (780bp) protein (260aa)
TIGR00245 family protein n=5 Tax=Firmicutes RepID=E4LSJ2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQJ60664.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_114_360G1_scaffold_562_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17241..17876)
DNA (636bp) protein (212aa)
ABC transporter, ATP-binding protein n=5 Tax=Firmicutes RepID=E4LSJ3_9CLOT
ABC transporter family protein {ECO:0000313|EMBL:EQJ60663.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ABC transporter
L3_114_360G1_scaffold_562_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17981..18856
DNA (876bp) protein (292aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=H1AVH3_9FIRM
EamA-like transporter family protein {ECO:0000313|EMBL:EQJ60662.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
membrane protein
L3_114_360G1_scaffold_562_24
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

18956..19102
DNA (147bp) protein (49aa)
Uncharacterized protein n=7 Tax=Firmicutes RepID=E4LSJ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY86568.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_114_360G1_scaffold_562_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19384..21219)
DNA (1836bp) protein (612aa)
Asparagine synthase {ECO:0000313|EMBL:EQJ60660.1}; EC=6.3.5.4 {ECO:0000313|EMBL:EQJ60660.1};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Asparagine synthetase n=1 Tax=Clostridium difficile P28 RepID=T4NYS0_CLODI
asparagine synthetase
L3_114_360G1_scaffold_562_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21312..22136)
DNA (825bp) protein (275aa)
pyruvate formate lyase activator (EC:1.97.1.4)
Radical SAM domain protein n=5 Tax=Firmicutes RepID=E4LSJ7_9CLOT
Radical SAM superfamily protein {ECO:0000313|EMBL:EQJ60659.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_114_360G1_scaffold_562_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22120..23439)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LSJ8_9CLOT
Memo-like family protein {ECO:0000313|EMBL:EQJ60658.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_114_360G1_scaffold_562_28
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23761..24732)
DNA (972bp) protein (324aa)
Mbl protein n=7 Tax=Firmicutes RepID=E4LSJ9_9CLOT
Mbl protein {ECO:0000313|EMBL:EFR38101.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
rod shape-determining protein Mbl
L3_114_360G1_scaffold_562_29
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(24735..24854)
DNA (120bp) protein (40aa)
Uncharacterized protein n=6 Tax=Firmicutes RepID=E4LSK0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY86562.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_114_360G1_scaffold_562_30
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25412..26413)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=7 Tax=Firmicutes RepID=E4LSK1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR38226.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
Displaying items 1-30 of 44 in total

View Taxonomy