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L3_114_360G1_scaffold_569

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_360G1_scaffold_569_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..113
DNA (111bp) protein (37aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JAK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77625.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_114_360G1_scaffold_569_2
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

129..239
DNA (111bp) protein (37aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JAK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77639.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_114_360G1_scaffold_569_3
unknown

Not on your lists

455..655
DNA (201bp) protein (67aa)

This feature has no annotations

L3_114_360G1_scaffold_569_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

636..1916
DNA (1281bp) protein (427aa)
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (EC:2.7.8.6)
polyprenyl glycosylphosphotransferase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00030634EE
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase {ECO:0000313|EMBL:EES77694.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_114_360G1_scaffold_569_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2182..2541
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPI3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82047.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_114_360G1_scaffold_569_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2593..4044
DNA (1452bp) protein (484aa)
undecaprenyl-phosphate galactose phosphotransferase (EC:2.7.8.6)
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPI2_9CLOT
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase {ECO:0000313|EMBL:EEA82046.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_114_360G1_scaffold_569_7
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4133..5278
DNA (1146bp) protein (382aa)
glycosyl transferase family protein (EC:2.4.-.-)
Glycosyltransferase group 1 family protein n=1 Tax=Eubacterium sp. CAG:156 RepID=R5ZL65_9FIRM
Glycosyltransferase group 1 family protein {ECO:0000313|EMBL:CDA29612.1}; TaxID=1262880 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:156.;"
L3_114_360G1_scaffold_569_8
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5280..6332
DNA (1053bp) protein (351aa)
UDP-glucuronate 5'-epimerase (EC:5.1.3.12)
NAD-dependent epimerase/dehydratase n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GQ28_9FIRM
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CCY14676.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
L3_114_360G1_scaffold_569_9
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6366..7616
DNA (1251bp) protein (417aa)
UDP-glucose dehydrogenase (EC:1.1.1.22)
Eps11H n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GPL3_9FIRM
Eps11H {ECO:0000313|EMBL:CCY14677.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
L3_114_360G1_scaffold_569_10
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7644..8894
DNA (1251bp) protein (417aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5F9D4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF06976.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
glycosyl transferase 4
L3_114_360G1_scaffold_569_11
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8912..10096
DNA (1185bp) protein (395aa)
Radical SAM domain protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B710_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:EEG90703.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
Predicted Fe-S oxidoreductases
L3_114_360G1_scaffold_569_12
unknown

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10099..10329
DNA (231bp) protein (77aa)

This feature has no annotations

L3_114_360G1_scaffold_569_13
Lactobacillus helveticus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10296..11330
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA83_9ACTN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJY62075.1}; TaxID=1587 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus helveticus (Lactobacillus suntoryeus).;"
L3_114_360G1_scaffold_569_14
Bacteroides cellulosilyticus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11421..12638
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Bacteroides cellulosilyticus CL02T12C19 RepID=I9EUX5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY24234.1}; TaxID=997874 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides cellulosilyticus CL02T12C19.;"
L3_114_360G1_scaffold_569_15
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12628..13566
DNA (939bp) protein (313aa)
Glycosyl transferase n=1 Tax=Clostridium sp. CAG:1193 RepID=R5IT50_9CLOT
Glycosyl transferase {ECO:0000313|EMBL:CCY45275.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
Glycosyltransferases involved in cell wall biogenesis
L3_114_360G1_scaffold_569_16
Clostridium sp. CAG:470, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13629..14738
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:470 RepID=R7FHJ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE14310.1}; TaxID=1262812 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:470.;"
hypothetical protein
L3_114_360G1_scaffold_569_17
Bacillus coagulans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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14774..16174
DNA (1401bp) protein (467aa)
polysaccharide biosynthesis protein n=1 Tax=Sporolactobacillus vineae RepID=UPI00028984A2
polysaccharide biosynthesis protein
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:AEP00093.1}; TaxID=345219 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus coagulans 36D1.;"
L3_114_360G1_scaffold_569_18
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16191..17048
DNA (858bp) protein (286aa)
Glycosyltransferase n=6 Tax=Clostridium thermocellum RepID=A3DF59_CLOTH
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:ABN52588.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_114_360G1_scaffold_569_19
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17090..18136
DNA (1047bp) protein (349aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VCR2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO58659.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
Coenzyme F420-reducing hydrogenase, beta subunit
L3_114_360G1_scaffold_569_20
unknown

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18129..19097
DNA (969bp) protein (323aa)

This feature has no annotations

L3_114_360G1_scaffold_569_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19401..21239
DNA (1839bp) protein (613aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPG5_9CLOT
L3_114_360G1_scaffold_569_22
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21265..22203
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GC22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY14688.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
GalU; UDP-glucose pyrophosphorylase
L3_114_360G1_scaffold_569_23
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22220..22849
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5D159_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX73935.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
VanZ-like protein
L3_114_360G1_scaffold_569_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22948..23670
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPG2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82097.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_114_360G1_scaffold_569_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23716..24072)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPG1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82096.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_114_360G1_scaffold_569_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24222..24464
DNA (243bp) protein (81aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPG0_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEA82095.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
putative Xre family DNA-binding protein
L3_114_360G1_scaffold_569_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24576..25178
DNA (603bp) protein (201aa)
LexA repressor {ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.- {ECO:0000256|SAAS:SAAS00273293};; EC=3.4.21.88 {ECO:0000256|SAAS:SAAS00008054};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
SOS regulatory protein LexA (EC:3.4.21.88)
Repressor LexA n=1 Tax=Clostridium nexile DSM 1787 PF9_9CLOT">RepID=B6FPF9_9CLOT
L3_114_360G1_scaffold_569_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25364..25600
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 PF8_9CLOT">RepID=B6FPF8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82093.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_114_360G1_scaffold_569_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26340..26696
DNA (357bp) protein (119aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium nexile DSM 1787 PF7_9CLOT">RepID=B6FPF7_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEA82092.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Helix-turn-helix.
L3_114_360G1_scaffold_569_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26792..26995
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 PF6_9CLOT">RepID=B6FPF6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82091.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Displaying items 1-30 of 38 in total

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