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L3_114_360G1_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 725 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_360G1_scaffold_2_1
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..267)
DNA (267bp) protein (89aa)
ATPases involved in chromosome partitioning n=14 Tax=Firmicutes RepID=D4K2I5_9FIRM
ATPases involved in chromosome partitioning
Uncharacterized protein {ECO:0000313|EMBL:EDP15322.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
L3_114_360G1_scaffold_2_2
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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956..1687
DNA (732bp) protein (244aa)
Response regulator of the LytR/AlgR family n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GKX9_EUBLK
Response regulator of the LytR/AlgR family
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:ADO36221.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L3_114_360G1_scaffold_2_3
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1684..3084
DNA (1401bp) protein (467aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GKY0_EUBLK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO36222.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L3_114_360G1_scaffold_2_4
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3462..5786
DNA (2325bp) protein (775aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIC8_9CLOT
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EEG28724.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
S-layer protein
L3_114_360G1_scaffold_2_5
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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6412..6951
DNA (540bp) protein (180aa)
methylated-DNA--protein-cysteine methyltransferase (EC:2.1.1.63)
6-O-methylguanine DNA methyltransferase DNA binding domain protein n=1 Tax=Akkermansia sp. CAG:344 RepID=R7E1U8_9BACT
6-O-methylguanine DNA methyltransferase DNA binding domain protein {ECO:0000313|EMBL:CDD96301.1}; TaxID=1262691 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia sp. CAG:344.;"
L3_114_360G1_scaffold_2_6
unknown

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7458..7784
DNA (327bp) protein (109aa)

This feature has no annotations

L3_114_360G1_scaffold_2_7
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7855..9312)
DNA (1458bp) protein (486aa)
Aldehyde dehydrogenase (NAD) family protein {ECO:0000313|EMBL:EEG28845.1}; EC=1.2.1.- {ECO:0000313|EMBL:EEG28845.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Aldehyde dehydrogenase (NAD) family protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EI37_9CLOT
NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
L3_114_360G1_scaffold_2_8
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9688..11019)
DNA (1332bp) protein (444aa)
glutaconyl-CoA decarboxylase beta subunit (EC:4.1.1.3 4.1.1.70)
Glutaconyl-CoA decarboxylase beta subunit n=1 Tax=Eubacterium sp. CAG:202 RepID=R6N850_9FIRM
Glutaconyl-CoA decarboxylase beta subunit {ECO:0000313|EMBL:CDC02461.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
L3_114_360G1_scaffold_2_9
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11051..11440)
DNA (390bp) protein (130aa)
Sodium pump decarboxylase gamma subunit n=1 Tax=Clostridium leptum CAG:27 RepID=R6NB50_9CLOT
Sodium pump decarboxylase gamma subunit {ECO:0000313|EMBL:CDC03456.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein predicted by Glimmer/Critica
L3_114_360G1_scaffold_2_10
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11612..12913)
DNA (1302bp) protein (434aa)
galactokinase (EC:2.7.1.6)
GHMP kinase, N-terminal domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P930_9FIRM
GHMP kinase, N-terminal domain protein {ECO:0000313|EMBL:EDS12056.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L3_114_360G1_scaffold_2_11
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13072..14052
DNA (981bp) protein (327aa)
Oxidoreductase NAD-binding domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUV4_9CLOT
Oxidoreductase NAD-binding domain protein {ECO:0000313|EMBL:EDO60754.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
2-polyprenylphenol 6-hydroxylase
L3_114_360G1_scaffold_2_12
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14045..15442
DNA (1398bp) protein (466aa)
Glutamate synthase (NADPH), homotetrameric {ECO:0000313|EMBL:EEG29299.1}; EC=1.4.1.13 {ECO:0000313|EMBL:EEG29299.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
sulfide dehydrogenase (flavoprotein) subunit SudA (EC:1.97.-.- 1.4.1.13 1.4.1.14)
Glutamate synthase (NADPH), homotetrameric n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGV1_9CLOT
L3_114_360G1_scaffold_2_13
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15521..15919)
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YWQ2_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB93390.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_114_360G1_scaffold_2_14
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16256..16744
DNA (489bp) protein (163aa)
Acetyltransferase, GNAT family n=1 Tax=Clostridium leptum DSM 753 RepID=A7VW25_9CLOT
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EDO59972.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Sortase and related acyltransferases
L3_114_360G1_scaffold_2_15
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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16839..17873
DNA (1035bp) protein (345aa)
Peptidase M23 n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U6X2_ETHHY
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:ADU26939.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L3_114_360G1_scaffold_2_16
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17863..18465
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000365ECD3
Peptidase, M50 domain protein {ECO:0000313|EMBL:EJF40050.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Peptidase family M50.
L3_114_360G1_scaffold_2_17
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18676..20532
DNA (1857bp) protein (619aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DYT9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA90054.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
Fe-S oxidoreductase
L3_114_360G1_scaffold_2_18
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20504..21157
DNA (654bp) protein (218aa)
Radical SAM-linked protein n=1 Tax=Clostridium sp. CAG:964 RepID=R6U3F9_9CLOT
Radical SAM-linked protein {ECO:0000313|EMBL:CCX82408.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_114_360G1_scaffold_2_19
Clostridium sp. CAG:508, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21192..22283
DNA (1092bp) protein (364aa)
Oxidoreductase domain protein n=1 Tax=Clostridium sp. CAG:508 RepID=R6Q5I2_9CLOT
Oxidoreductase domain protein {ECO:0000313|EMBL:CDC31958.1}; TaxID=1262815 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:508.;"
oxidoreductase domain protein
L3_114_360G1_scaffold_2_20
unknown

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22333..22893
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7ENG5_CLOPA
hypothetical protein
L3_114_360G1_scaffold_2_21
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23096..23440
DNA (345bp) protein (115aa)
50S ribosomal protein L19 n=2 Tax=Clostridium RepID=A7VUW9_9CLOT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
LSU ribosomal protein L19P
L3_114_360G1_scaffold_2_22
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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23658..24260
DNA (603bp) protein (201aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=2 Tax=root RepID=R5AUX4_9FIRM
L3_114_360G1_scaffold_2_23
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24325..25194
DNA (870bp) protein (290aa)
Ribosome biogenesis GTPase A n=1 Tax=Clostridium sp. CAG:352 RepID=R6R1I9_9CLOT
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
ribosome biogenesis GTP-binding protein YlqF
L3_114_360G1_scaffold_2_24
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25191..25829
DNA (639bp) protein (213aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Clostridium sp. CAG:352 RepID=R6R809_9CLOT
L3_114_360G1_scaffold_2_25
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25826..26203
DNA (378bp) protein (126aa)
UPF0102 protein BN621_00774 n=1 Tax=Clostridium sp. CAG:352 RepID=R6QR60_9CLOT
UPF0102 protein BN621_00774 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L3_114_360G1_scaffold_2_26
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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26334..27266
DNA (933bp) protein (311aa)
membrane dipeptidase (EC:3.4.13.19)
Membrane dipeptidase {ECO:0000313|EMBL:ADZ82361.1}; EC=3.4.13.19 {ECO:0000313|EMBL:ADZ82361.1};; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Membrane dipeptidase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JN19_CELLD
L3_114_360G1_scaffold_2_27
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27360..28856
DNA (1497bp) protein (499aa)
Threonine synthase {ECO:0000313|EMBL:EEG28511.1}; EC=4.2.3.1 {ECO:0000313|EMBL:EEG28511.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
thrC; Threonine synthase (EC:4.2.3.1)
Threonine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EJ46_9CLOT
L3_114_360G1_scaffold_2_28
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

comp(28917..29093)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6T9I2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC70033.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
hypothetical protein
L3_114_360G1_scaffold_2_29
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29212..29913
DNA (702bp) protein (234aa)
Ser/Thr phosphatase family protein n=1 Tax=Clostridium sp. CAG:964 RepID=R6V516_9CLOT
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:CDC77877.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
Predicted phosphohydrolase
L3_114_360G1_scaffold_2_30
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30056..31396
DNA (1341bp) protein (447aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
tig; Trigger factor (EC:5.2.1.8)
Trigger factor n=1 Tax=Clostridium sp. MSTE9 RepID=J0WUY8_9CLOT
Displaying items 1-30 of 725 in total

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