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L3_121_000G1_scaffold_1817

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_1817_1
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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1..180
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6G8Z0_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB21918.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
integrase
L3_121_000G1_scaffold_1817_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(948..1961)
DNA (1014bp) protein (338aa)
Transcriptional regulator containing cell envelope-related transcriptional attenuator domain n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EPS9_BIFBS
transcriptional regulator containing cell envelope-related transcriptional attenuator domain
Transcriptional regulator containing cell envelope-related transcriptional attenuator domain {ECO:0000313|EMBL:ADO52616.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_000G1_scaffold_1817_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1910..2296)
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EPT0_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52617.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_000G1_scaffold_1817_4
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2666..4246
DNA (1581bp) protein (527aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZS9_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22128.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_000G1_scaffold_1817_5
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(4569..5564)
DNA (996bp) protein (332aa)
Conserved hypothetical secreted protein with G5 domain n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZT0_BIFBP
hypothetical protein
Conserved hypothetical secreted protein with G5 domain {ECO:0000313|EMBL:CDB22127.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_000G1_scaffold_1817_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(5797..6159)
DNA (363bp) protein (121aa)
thioredoxin (EC:1.8.1.8)
Thioredoxin n=4 Tax=Bifidobacterium bifidum RepID=E4NZT1_BIFBP
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_121_000G1_scaffold_1817_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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6357..6983
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V810_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49752.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_121_000G1_scaffold_1817_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7129..7983
DNA (855bp) protein (285aa)
Hydrolase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IM89_BIFBI
Hydrolase {ECO:0000313|EMBL:EKE49875.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hydrolase
L3_121_000G1_scaffold_1817_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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8097..9188
DNA (1092bp) protein (364aa)
Putative phosphohydrolase {ECO:0000313|EMBL:KFI42474.1}; EC=3.6.1.22 {ECO:0000313|EMBL:KFI42474.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Hydrolase, NUDIX family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DL00_BIFBI
phosphohydrolase
L3_121_000G1_scaffold_1817_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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9266..11116
DNA (1851bp) protein (617aa)
ErfK/YbiS/YcfS/YnhG n=2 Tax=Bifidobacterium bifidum RepID=E4V813_BIFBI
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:EFR49755.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_121_000G1_scaffold_1817_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11264..11671
DNA (408bp) protein (136aa)
Glycine cleavage system H protein n=6 Tax=Bifidobacterium bifidum RepID=E3EPT8_BIFBS
gcvH; glycine cleavage system H protein GcvH
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_121_000G1_scaffold_1817_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11799..13148
DNA (1350bp) protein (450aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=E4V815_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFR49757.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_121_000G1_scaffold_1817_13
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13204..15666
DNA (2463bp) protein (821aa)
ptrB; protease II PtrB (EC:3.4.21.83)
PtrB Protease II n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZT8_BIFBP
PtrB Protease II {ECO:0000313|EMBL:CDB22817.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_000G1_scaffold_1817_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16151..17182
DNA (1032bp) protein (344aa)
3-isopropylmalate dehydrogenase n=6 Tax=Bifidobacterium RepID=E3EPU2_BIFBS
leuB; 3-isopropylmalate dehydrogenase
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:CDB22815.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_000G1_scaffold_1817_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17941..18579
DNA (639bp) protein (213aa)
lplA; lipoate-protein ligase A (EC:2.7.7.63)
LplA Lipoate-protein ligase A n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZU0_BIFBP
Lipoate-protein ligase A {ECO:0000313|EMBL:EKE50775.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_121_000G1_scaffold_1817_16
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18743..19462
DNA (720bp) protein (240aa)
transcription regulator, crp family (EC:3.1.1.5)
Transcription regulator, crp family n=6 Tax=Bifidobacterium RepID=E4NZU1_BIFBP
Transcription regulator crp family {ECO:0000313|EMBL:CDB22396.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_000G1_scaffold_1817_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19637..21946
DNA (2310bp) protein (770aa)
pbp; penicillin-binding protein Pbp (EC:2.4.1.129)
Pbp Penicillin-binding protein n=2 Tax=Bifidobacterium bifidum RepID=E4NZU2_BIFBP
Penicillin-binding protein Pbp {ECO:0000313|EMBL:EKE50777.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_121_000G1_scaffold_1817_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22234..23367
DNA (1134bp) protein (378aa)
NADH-dependent flavin oxidoreductase YqjM n=3 Tax=Bifidobacterium RepID=E3ELT7_BIFBS
baiC; NADH-dependent flavin oxidoreductase YqjM
NADH-dependent flavin oxidoreductase YqjM {ECO:0000313|EMBL:ADO52633.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_000G1_scaffold_1817_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23437..24594)
DNA (1158bp) protein (386aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|SAAS:SAAS00084821};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Dihydroorotate dehydrogenase n=8 Tax=Bifidobacterium RepID=E3ELT8_BIFBS
pyrD2; dihydroorotate dehydrogenase
L3_121_000G1_scaffold_1817_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24788..25591
DNA (804bp) protein (268aa)
Transcriptional regulator, DeoR family n=7 Tax=Bifidobacterium RepID=E3ELT9_BIFBS
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EFR49766.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_121_000G1_scaffold_1817_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26045..26191
DNA (147bp) protein (49aa)
galT; galactose-1-phosphate uridylyl transferase (EC:2.7.7.12)
UTP--hexose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:EFR49767.1}; EC=2.7.7.10 {ECO:0000313|EMBL:EFR49767.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Galactose-1-phosphate uridylyltransferase (Fragment) n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MST8_BIFBI
Displaying 21 items

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