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L3_121_000G1_scaffold_15

Search features with annotation key words

Displaying items 1-30 of 293 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_15_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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225..1337
DNA (1113bp) protein (371aa)
Hydantoinase/oxoprolinase family protein n=113 Tax=Clostridium difficile RepID=T3ITD5_CLODC
Hydantoinase/oxoprolinase family protein {ECO:0000313|EMBL:EQE65330.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Group I intron
L3_121_000G1_scaffold_15_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1500..2042)
DNA (543bp) protein (181aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=T3GY07_CLODC
conserved hypothetical protein
PF08002 family protein {ECO:0000313|EMBL:CKH11047.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ98320.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_121_000G1_scaffold_15_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2190..2474)
DNA (285bp) protein (95aa)
Uncharacterized protein n=203 Tax=Clostridium difficile RepID=G6BXW2_CLODI
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:CCL29926.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_121_000G1_scaffold_15_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2537..3301)
DNA (765bp) protein (255aa)
putative acyltransferase (EC:2.3.1.51)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:CKH11112.1}; Putative acyltransferase {ECO:0000313|EMBL:CDT42655.1}; EC=2.3.1.51 {ECO:0000313|EMBL:CDT42655.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Acyltransferase n=175 Tax=Clostridium difficile RepID=G6BXW1_CLODI
L3_121_000G1_scaffold_15_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3583..3849)
DNA (267bp) protein (89aa)
Uncharacterized protein n=195 Tax=Clostridium difficile RepID=T3GZI7_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQH99399.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_121_000G1_scaffold_15_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3891..4700)
DNA (810bp) protein (270aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=2 Tax=Clostridium difficile RepID=T2YI81_CLODI
Bacterial regulatory helix-turn-helix s, AraC family protein {ECO:0000313|EMBL:EQE65326.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Transcriptional regulator, AraC family
L3_121_000G1_scaffold_15_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5013..5294
DNA (282bp) protein (94aa)
Uncharacterized protein n=97 Tax=Clostridium difficile RepID=T3H271_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL21911.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_121_000G1_scaffold_15_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5558..5812
DNA (255bp) protein (85aa)
Uncharacterized protein n=186 Tax=Clostridium difficile RepID=Q186T3_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE65304.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_121_000G1_scaffold_15_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5857..6180
DNA (324bp) protein (108aa)
Uncharacterized protein n=145 Tax=Clostridium difficile RepID=G6BXV6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE65305.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
uncharacterised protein
L3_121_000G1_scaffold_15_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6739..6933)
DNA (195bp) protein (65aa)
Putative aBC dipeptide-binding protein n=1 Tax=Clostridium difficile DA00211 RepID=T3UK78_CLODI
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL21915.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_121_000G1_scaffold_15_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7307..8926)
DNA (1620bp) protein (540aa)
Na+/Pi-cotransporter family protein n=125 Tax=Clostridium difficile RepID=T3GZY4_CLODC
Na/Pi-cotransporter II-like protein {ECO:0000313|EMBL:EHJ26449.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
putative sodium:phosphate symporter
L3_121_000G1_scaffold_15_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9235..9474)
DNA (240bp) protein (80aa)
Transcriptional regulator, AraC family n=51 Tax=Clostridium difficile RepID=G6BXV3_CLODI
Bacterial regulatory helix-turn-helix s, AraC family protein {ECO:0000313|EMBL:EQI84563.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
transcriptional regulator with integral membrane sensor, AraC family
L3_121_000G1_scaffold_15_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9745..9936
DNA (192bp) protein (64aa)
Uncharacterized protein n=207 Tax=Clostridium difficile RepID=F3Y5U1_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ26451.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_121_000G1_scaffold_15_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10025..10837)
DNA (813bp) protein (271aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=202 Tax=Clostridium difficile RepID=C9XR08_CLODC
ATP-binding protein
Mrp-like family protein {ECO:0000313|EMBL:EHJ26452.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_121_000G1_scaffold_15_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11259..12410
DNA (1152bp) protein (384aa)
Acetyltransferase family protein n=9 Tax=Clostridium difficile RepID=T2XM36_CLODI
Acetyltransferase domain protein {ECO:0000313|EMBL:EQE65312.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
putative acetyltransferase
L3_121_000G1_scaffold_15_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12528..13166
DNA (639bp) protein (213aa)
5-methyltetrahydrofolate--homocysteine S-methyltransferase domain protein {ECO:0000313|EMBL:EQE65285.1}; EC=2.1.1.13 {ECO:0000313|EMBL:EQE65285.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
5-methyltetrahydrofolate--homocysteine S-methyltransferase domain protein n=180 Tax=Clostridium difficile RepID=C9XR10_CLODC
corrinoid protein
L3_121_000G1_scaffold_15_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13167..14189
DNA (1023bp) protein (341aa)
Uroporphyrinogen decarboxylase family protein n=84 Tax=Clostridium difficile RepID=T3H197_CLODC
hemE; Uroporphyrinogen decarboxylase (URO-D)
Uroporphyrinogen decarboxylase (URO-D) {ECO:0000313|EMBL:CCL29941.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_121_000G1_scaffold_15_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14179..14799
DNA (621bp) protein (207aa)
Vitamin B12 dependent methionine synthase, activation domain protein n=41 Tax=Clostridium difficile RepID=T3GZ17_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ68602.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_121_000G1_scaffold_15_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14926..15612)
DNA (687bp) protein (229aa)
HAD hydrolase, IA, variant 1 family protein n=70 Tax=Clostridium difficile RepID=T3GXQ7_CLODC
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:CCL21924.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_121_000G1_scaffold_15_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15626..16171)
DNA (546bp) protein (182aa)
Helix-turn-helix family protein n=193 Tax=Clostridium difficile RepID=T3GW38_CLODC
Transcriptional regulator, HTH-type
Helix-turn-helix family protein {ECO:0000313|EMBL:EQE65275.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_121_000G1_scaffold_15_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16381..17646
DNA (1266bp) protein (422aa)
Citrate transporter n=63 Tax=Clostridium difficile RepID=G6BXU4_CLODI
gluconate permease
Putative gluconate permease {ECO:0000313|EMBL:CBE04340.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_121_000G1_scaffold_15_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17733..19727
DNA (1995bp) protein (665aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Two-component sensor histidine kinase (EC:2.7.13.3)
His Kinase A domain protein n=27 Tax=Clostridium difficile RepID=T3GVY2_CLODC
L3_121_000G1_scaffold_15_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19727..21049
DNA (1323bp) protein (441aa)
AAA domain family protein n=70 Tax=Clostridium difficile RepID=C9XR17_CLODC
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CCL29947.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_121_000G1_scaffold_15_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21328..22614
DNA (1287bp) protein (429aa)
Glycine/sarcosine/betaine reductase complex,protein B, alpha and beta subunits {ECO:0000313|EMBL:CCL21929.1}; EC=1.21.4.- {ECO:0000313|EMBL:CCL21929.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Glycine reductase complex component B subunits alpha and beta n=166 Tax=Clostridium difficile RepID=C9XR18_CLODC
sarcosine reductase complex component B subunit alpha
L3_121_000G1_scaffold_15_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22700..23749
DNA (1050bp) protein (350aa)
Sarcosine reductase complex component B subunit beta {ECO:0000313|EMBL:CCL21930.1}; EC=1.21.4.3 {ECO:0000313|EMBL:CCL21930.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Glycine reductase complex component B subunit gamma n=148 Tax=Clostridium difficile RepID=T3H0A3_CLODC
sarcosine reductase complex component B subunit alpha
L3_121_000G1_scaffold_15_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23777..24007
DNA (231bp) protein (77aa)
SelenoB, glycine/betaine/sarcosine/D-proline reductase family protein n=204 Tax=Clostridium difficile RepID=T3H0S5_CLODC
sarcosine reductase complex component B subunit alpha
SelenoB, glycine/betaine/sarcosine/D-proline reductase family protein {ECO:0000313|EMBL:EQI84527.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L3_121_000G1_scaffold_15_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24284..25015
DNA (732bp) protein (244aa)
LytTr DNA-binding domain protein n=2 Tax=Clostridium difficile RepID=G6BXT8_CLODI
LytTr DNA-binding domain protein {ECO:0000313|EMBL:EHJ24855.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
Two-component response regulator
L3_121_000G1_scaffold_15_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25017..26375
DNA (1359bp) protein (453aa)
Two-component sensor histidine kinase n=114 Tax=Clostridium difficile RepID=U3WBZ1_CLODI
Two-component sensor histidine kinase {ECO:0000313|EMBL:CCL21933.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Two-component sensor histidine kinase
L3_121_000G1_scaffold_15_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26414..26899
DNA (486bp) protein (162aa)
Uncharacterized protein n=46 Tax=Clostridium difficile RepID=T3UK59_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ24853.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
conserved hypothetical protein
L3_121_000G1_scaffold_15_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27162..27398)
DNA (237bp) protein (79aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=T3K922_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL21936.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
conserved hypothetical protein
Displaying items 1-30 of 293 in total

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