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L3_121_000G1_scaffold_19

Search features with annotation key words

Displaying items 1-30 of 234 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_19_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..523
DNA (522bp) protein (174aa)
Transposase, IS605 OrfB family (Fragment) n=1 Tax=Clostridium difficile Y270 RepID=T4F2M6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS87714.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
tlpB; transposase-like protein B
L3_121_000G1_scaffold_19_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

657..926
DNA (270bp) protein (90aa)
Uncharacterized protein n=21 Tax=Clostridium difficile RepID=T2UH70_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS87713.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L3_121_000G1_scaffold_19_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

953..1285
DNA (333bp) protein (111aa)
Uncharacterized protein n=138 Tax=Clostridium difficile RepID=Q185H3_CLOD6
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH27799.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ98913.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_121_000G1_scaffold_19_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1559..1711
DNA (153bp) protein (51aa)
Uncharacterized protein n=10 Tax=Clostridium difficile RepID=G6BZ38_CLODI
putative phage protein
Putative phage protein {ECO:0000313|EMBL:CAJ69184.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_121_000G1_scaffold_19_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1905..2828
DNA (924bp) protein (308aa)
Short C-terminal domain protein n=6 Tax=Clostridium difficile RepID=T2YCN1_CLODI
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH27758.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ98911.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_121_000G1_scaffold_19_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4417..4659
DNA (243bp) protein (81aa)
Uncharacterized protein n=103 Tax=Clostridium difficile RepID=T4PLP1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL22616.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_121_000G1_scaffold_19_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4779..5144
DNA (366bp) protein (122aa)
BRO family, N-terminal domain protein n=7 Tax=Clostridium difficile RepID=T2UHU0_CLODI
BRO family, N-terminal domain protein {ECO:0000313|EMBL:EQE62178.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
putative phage-related regulatory protein
L3_121_000G1_scaffold_19_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5141..5593
DNA (453bp) protein (151aa)
Uncharacterized protein n=12 Tax=Clostridium difficile RepID=T2UH65_CLODI
Prophage antirepressor-related protein {ECO:0000313|EMBL:CDS87707.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS85685.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
prophage antirepressor-related protein
L3_121_000G1_scaffold_19_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5645..5806
DNA (162bp) protein (54aa)
Uncharacterized protein n=182 Tax=Clostridium difficile RepID=T3GK18_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE62174.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_121_000G1_scaffold_19_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6135..6485)
DNA (351bp) protein (117aa)
Putative membrane protein n=11 Tax=Clostridium difficile RepID=T2UIP7_CLODI
Putative membrane protein {ECO:0000313|EMBL:CDT13634.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS87705.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative membrane protein
L3_121_000G1_scaffold_19_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6735..7052)
DNA (318bp) protein (106aa)
Uncharacterized protein n=61 Tax=Clostridium difficile RepID=G6BZ31_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS87704.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
conserved hypothetical protein
L3_121_000G1_scaffold_19_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7430..7630)
DNA (201bp) protein (67aa)
Uncharacterized protein n=18 Tax=Clostridium difficile RepID=T2UHT3_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS85689.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
conserved hypothetical protein
L3_121_000G1_scaffold_19_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7649..8062)
DNA (414bp) protein (138aa)
Putative membrane protein n=11 Tax=Clostridium difficile RepID=T2UH60_CLODI
Putative membrane protein {ECO:0000313|EMBL:CDS87702.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative membrane protein
L3_121_000G1_scaffold_19_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8046..8279)
DNA (234bp) protein (78aa)
Helix-turn-helix family protein n=12 Tax=Clostridium difficile RepID=T4IJ07_CLODI
Transcriptional regulator, HTH-type
Transcriptional regulator, HTH-type {ECO:0000313|EMBL:CCK94748.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_121_000G1_scaffold_19_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8498..8872
DNA (375bp) protein (125aa)
Penicillinase repressor family protein n=10 Tax=Clostridium difficile RepID=T2TKM2_CLODI
Penicillinase repressor family protein {ECO:0000313|EMBL:EQG75761.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Transcriptional regulator, beta-lactamsrepressor
L3_121_000G1_scaffold_19_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9484..10176
DNA (693bp) protein (231aa)
Transcriptional regulatory family protein n=207 Tax=Clostridium difficile RepID=C9XL82_CLODC
two-component system response regulator
Transcriptional regulatory family protein {ECO:0000313|EMBL:EQE62445.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_121_000G1_scaffold_19_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10372..12432
DNA (2061bp) protein (687aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
His Kinase A domain protein n=92 Tax=Clostridium difficile RepID=T2TD65_CLODI
Two-component sensor histidine kinase
L3_121_000G1_scaffold_19_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12638..12961)
DNA (324bp) protein (108aa)
Branched-chain amino acid transport protein n=191 Tax=Clostridium difficile RepID=G6BZ23_CLODI
hypothetical protein
Branched-chain amino acid transport family protein {ECO:0000313|EMBL:EQE62425.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_121_000G1_scaffold_19_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12954..13655)
DNA (702bp) protein (234aa)
AzlC family protein n=187 Tax=Clostridium difficile RepID=C9XL79_CLODC
hypothetical protein
AzlC family protein {ECO:0000313|EMBL:EQE62426.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_121_000G1_scaffold_19_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13933..15318)
DNA (1386bp) protein (462aa)
GntR-family transcriptional regulator n=123 Tax=Clostridium difficile RepID=C9XL78_CLODC
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:CKH27375.1}; Putative PLP-dependent transcriptional regulator {ECO:0000313|EMBL:CDS87692.1}; Transcriptional regulator, GntR family {ECO:0000313|EMBL:CDS85697.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_121_000G1_scaffold_19_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15764..16186)
DNA (423bp) protein (141aa)
Uncharacterized protein n=188 Tax=Clostridium difficile RepID=C9XL76_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL30505.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_121_000G1_scaffold_19_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16281..16433)
DNA (153bp) protein (51aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T3FIP8_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS87684.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_121_000G1_scaffold_19_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16564..16680
DNA (117bp) protein (39aa)
Uncharacterized protein n=15 Tax=Clostridium difficile RepID=T2TJK1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE62433.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_121_000G1_scaffold_19_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16664..19567
DNA (2904bp) protein (968aa)
AAA domain family protein n=15 Tax=Clostridium difficile RepID=T2TJY6_CLODI
AAA domain family protein {ECO:0000313|EMBL:EQH99088.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Transcription antiterminator, PTS operonregulator
L3_121_000G1_scaffold_19_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19600..20046
DNA (447bp) protein (149aa)
PTS system, IIbc component n=151 Tax=Clostridium difficile RepID=C9XL74_CLODC
PTS system transporter subunit IIBC
PTS system, fructose/mannitol family IIA component {ECO:0000313|EMBL:CCL30503.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_121_000G1_scaffold_19_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20169..20471
DNA (303bp) protein (101aa)
PTS system, IIb component n=177 Tax=Clostridium difficile RepID=C9XL73_CLODC
PTS system transporter subunit IIB
PTS system, fructose/mannitol family IIB component {ECO:0000313|EMBL:CCK94735.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_121_000G1_scaffold_19_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20652..22058
DNA (1407bp) protein (469aa)
PTS system sugar-specific permease component family protein n=145 Tax=Clostridium difficile RepID=T3GGU0_CLODC
PTS system fructose/mannitol family transporter subunit IIC
PTS system sugar-specific permease component family protein {ECO:0000313|EMBL:EQH99085.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_121_000G1_scaffold_19_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22402..23460
DNA (1059bp) protein (353aa)
Putative sugar-phosphate dehydrogenase {ECO:0000313|EMBL:CCL22596.1}; EC=1.1.1.- {ECO:0000313|EMBL:CCL22596.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Zinc-binding dehydrogenase family protein n=12 Tax=Clostridium difficile RepID=T2TJJ7_CLODI
sugar dehydrogenase
L3_121_000G1_scaffold_19_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23559..24245
DNA (687bp) protein (229aa)
araD; L-ribulose-5-phosphate 4-epimerase (EC:5.1.3.4)
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:EQG76574.1}; EC=5.1.3.4 {ECO:0000313|EMBL:EQG76574.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L-ribulose-5-phosphate 4-epimerase n=172 Tax=Clostridium difficile RepID=T3GII6_CLODC
L3_121_000G1_scaffold_19_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24263..24910
DNA (648bp) protein (216aa)
Class II aldolase (EC:4.1.2.17)
Class II Aldolase and Adducin N-terminal domain protein n=7 Tax=Clostridium difficile RepID=T2UIW5_CLODI
Class II Aldolase and Adducin N-terminal domain protein {ECO:0000313|EMBL:EQG76018.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Displaying items 1-30 of 234 in total

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