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L3_121_000G1_scaffold_66

Search features with annotation key words

Displaying items 1-30 of 162 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_66_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(203..1606)
DNA (1404bp) protein (468aa)
MATE efflux family protein n=77 Tax=Clostridium difficile RepID=T2T9W4_CLODI
Na+ driven multidrug efflux pump
MATE efflux family protein {ECO:0000313|EMBL:EQG73768.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_121_000G1_scaffold_66_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1590..2051)
DNA (462bp) protein (154aa)
Transcriptional regulator, MarR family n=2 Tax=Clostridium difficile RepID=U4BQL4_CLODI
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CCL31478.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_121_000G1_scaffold_66_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2397..2912
DNA (516bp) protein (172aa)
Transcriptional regulator PadR-like family protein n=91 Tax=Clostridium difficile RepID=T3G291_CLODC
Transcriptional regulator, PadR family
Transcriptional regulator PadR-like family protein {ECO:0000313|EMBL:EQE59598.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_121_000G1_scaffold_66_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2961..3464
DNA (504bp) protein (168aa)
Uncharacterized protein n=55 Tax=Clostridium difficile RepID=Q17ZV6_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ70107.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_121_000G1_scaffold_66_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3461..4111
DNA (651bp) protein (217aa)
Uncharacterized protein n=66 Tax=Clostridium difficile RepID=G6BWX9_CLODI
NADPH-dependent FMN reductase family protein {ECO:0000313|EMBL:EQE59575.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
conserved hypothetical protein
L3_121_000G1_scaffold_66_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4246..5025)
DNA (780bp) protein (260aa)
Methyltransferase domain protein n=1 Tax=Clostridium difficile CD113 RepID=T4Y8Y7_CLODI
conserved hypothetical protein
Methyltransferase domain protein {ECO:0000313|EMBL:EQG73913.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_121_000G1_scaffold_66_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5137..5388)
DNA (252bp) protein (84aa)
Uncharacterized protein n=198 Tax=Clostridium difficile RepID=C9XRG1_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE59606.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_121_000G1_scaffold_66_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5582..6451)
DNA (870bp) protein (290aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=1 Tax=Clostridium difficile CD113 RepID=T4Y8U5_CLODI
Transcriptional regulator, AraC family
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CAJ70111.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_121_000G1_scaffold_66_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6789..7550)
DNA (762bp) protein (254aa)
ABC transporter family protein n=183 Tax=Clostridium difficile RepID=C9XRG3_CLODC
glycine/betaine ABC transporter ATP-binding protein
ABC transporter family protein {ECO:0000313|EMBL:EQE59569.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_121_000G1_scaffold_66_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7566..8348)
DNA (783bp) protein (261aa)
Substrate binding domain of ABC-type glycine betaine transport system family protein n=1 Tax=Clostridium difficile CD34 RepID=T2VLA0_CLODI
ABC-type transport system, glycine betaine/carnitine/choline permease {ECO:0000313|EMBL:CCL23664.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ABC-type transport system, glycinebetaine/carnitine/choline permease
L3_121_000G1_scaffold_66_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8478..9101)
DNA (624bp) protein (208aa)
Substrate binding domain of ABC-type glycine betaine transport system family protein n=4 Tax=Clostridium difficile RepID=T3SWB0_CLODI
ABC-type transport system, glycine betaine/carnitine/choline permease {ECO:0000313|EMBL:CCL23664.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
osmoprotectant ABC transporter substrate-binding/permease
L3_121_000G1_scaffold_66_12
unknown

Not on your lists

9236..9364
DNA (129bp) protein (43aa)

This feature has no annotations

L3_121_000G1_scaffold_66_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9513..11753)
DNA (2241bp) protein (747aa)
ABC-type transport system, ATP-binding protein {ECO:0000313|EMBL:CDS89311.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDS89311.1};; Putative excinuclease ABC, A subunit {ECO:0000313|EMBL:CDS85457.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC-type transport system, ATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=22 Tax=Clostridium difficile RepID=T2YM99_CLODI
L3_121_000G1_scaffold_66_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12165..12260)
DNA (96bp) protein (32aa)
Uncharacterized protein n=1 Tax=Clostridium difficile CD69 RepID=T2ZWX0_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ31545.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_121_000G1_scaffold_66_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12281..13081)
DNA (801bp) protein (267aa)
GlcNAc-PI de-N-acetylase family protein n=12 Tax=Clostridium difficile RepID=T2TC33_CLODI
hypothetical protein
GlcNAc-PI de-N-acetylase family protein {ECO:0000313|EMBL:EQG73897.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_121_000G1_scaffold_66_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13472..14347)
DNA (876bp) protein (292aa)
33 kDa chaperonin n=178 Tax=Clostridium difficile RepID=HSLO_CLOD6
hslO; 33 kDa chaperonin (Heat shock protein 33homolog) (HSP33)
33 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00117, ECO:0000256|SAAS:SAAS00038673}; Heat shock protein 33 homolog {ECO:0000256|HAMAP-Rule:MF_00117}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_121_000G1_scaffold_66_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14630..15376)
DNA (747bp) protein (249aa)
Putative methyltransferase n=4 Tax=Clostridium difficile RepID=U3Y8K9_CLODI
methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:CDS89317.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_121_000G1_scaffold_66_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15363..15617)
DNA (255bp) protein (85aa)
Small acid-soluble spore protein n=5 Tax=Clostridium difficile RepID=C9XRG9_CLODC
small acid-soluble spore protein
Small acid-soluble spore protein {ECO:0000313|EMBL:CEJ99872.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_121_000G1_scaffold_66_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15739..16857)
DNA (1119bp) protein (373aa)
peptidase (EC:3.5.1.-)
Amidohydrolase family protein n=145 Tax=Clostridium difficile RepID=C9XRH0_CLODC
Putative amidohydrolase {ECO:0000313|EMBL:CBE06883.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_121_000G1_scaffold_66_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17063..18256)
DNA (1194bp) protein (398aa)
L-serine dehydratase {ECO:0000313|EMBL:CCK95741.1}; EC=4.3.1.17 {ECO:0000313|EMBL:CCK95741.1};; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L-serine dehydratase n=202 Tax=Clostridium difficile RepID=C9XRH1_CLODC
L-serine dehydratase
L3_121_000G1_scaffold_66_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18579..19460
DNA (882bp) protein (294aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
4-hydroxy-tetrahydrodipicolinate synthase n=146 Tax=Clostridium difficile RepID=C9XRH2_CLODC
dapA1; dihydrodipicolinate synthase
L3_121_000G1_scaffold_66_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19880..20881
DNA (1002bp) protein (334aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Aspartate-semialdehyde dehydrogenase n=131 Tax=Clostridium difficile RepID=C9XRH3_CLODC
asd; aspartate-semialdehyde dehydrogenase
L3_121_000G1_scaffold_66_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20998..21885
DNA (888bp) protein (296aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
4-hydroxy-tetrahydrodipicolinate synthase n=218 Tax=Clostridium difficile RepID=C9XRH4_CLODC
dihydrodipicolinate synthase
L3_121_000G1_scaffold_66_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21952..22701
DNA (750bp) protein (250aa)
dapB1; Dihydrodipicolinate reductase 1 (DHPR 1) (EC:1.17.1.8)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|SAAS:SAAS00018068}; EC=1.17.1.8 {ECO:0000256|SAAS:SAAS00018030};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
4-hydroxy-tetrahydrodipicolinate reductase n=178 Tax=Clostridium difficile RepID=T3G1D6_CLODC
L3_121_000G1_scaffold_66_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22925..23641
DNA (717bp) protein (239aa)
dapH; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylateN-ac etyltransferase (EC:2.3.1.89)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_01691, ECO:0000256|SAAS:SAAS00023633}; EC=2.3.1.89 {ECO:0000256|HAMAP-Rule:MF_01691, ECO:0000256|SAAS:SAAS00023632};; Tetrahydrodipicolinate N-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_01691}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase n=117 Tax=Clostridium difficile RepID=DAPH_CLOD6
L3_121_000G1_scaffold_66_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23995..24984)
DNA (990bp) protein (330aa)
SPFH domain / Band 7 family protein n=131 Tax=Clostridium difficile RepID=T3G3W4_CLODC
membrane protein
SPFH domain / Band 7 family protein {ECO:0000313|EMBL:EQG73753.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_121_000G1_scaffold_66_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25424..26179
DNA (756bp) protein (252aa)
dapB2; Dihydrodipicolinate reductase 2 (DHPR 2) (EC:1.17.1.8)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
4-hydroxy-tetrahydrodipicolinate reductase n=89 Tax=Clostridium difficile RepID=T3G594_CLODC
L3_121_000G1_scaffold_66_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26686..28362)
DNA (1677bp) protein (559aa)
Collagen triple helix repeat family protein n=7 Tax=Clostridium difficile RepID=T3LMG3_CLODI
Collagen triple helix repeat family protein {ECO:0000313|EMBL:EQI76338.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
bclA2; exosporium glycoprotein
L3_121_000G1_scaffold_66_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28739..29278)
DNA (540bp) protein (180aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:CCL31501.1}; EC=2.4.2.8 {ECO:0000313|EMBL:CCL31501.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Hypoxanthine phosphoribosyltransferase n=86 Tax=Clostridium difficile RepID=C9XRI0_CLODC
hpt; hypoxanthine phosphoribosyltransferase
L3_121_000G1_scaffold_66_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29606..30913)
DNA (1308bp) protein (436aa)
UPF0597 protein QGC_3066 n=81 Tax=Clostridium difficile RepID=T3G224_CLODC
UPF0597 protein QCK_3431 {ECO:0000256|HAMAP-Rule:MF_01845}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
Displaying items 1-30 of 162 in total

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