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L3_121_000G1_scaffold_175

Search features with annotation key words

Displaying items 1-30 of 106 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_175_1
unknown

Not on your lists

2..430
DNA (429bp) protein (143aa)

This feature has no annotations

L3_121_000G1_scaffold_175_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(421..1791)
DNA (1371bp) protein (457aa)
DNA repair protein radA n=1 Tax=Roseburia sp. CAG:18 RepID=R5UI77_9FIRM
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA repair protein RadA
L3_121_000G1_scaffold_175_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1795..2208)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPM0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77734.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_121_000G1_scaffold_175_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2253..4697)
DNA (2445bp) protein (815aa)
ATPase AAA-2 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHJ5_9FIRM
ATPase AAA-2 {ECO:0000313|EMBL:CCZ77733.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ATPase AAA-2
L3_121_000G1_scaffold_175_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4721..6361)
DNA (1641bp) protein (547aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAK4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77732.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_121_000G1_scaffold_175_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6378..8129)
DNA (1752bp) protein (584aa)
Beta-N-acetylglucosaminidase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V2W1_9FIRM
Beta-N-acetylglucosaminidase {ECO:0000313|EMBL:CCZ77731.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Beta-N-acetylglucosaminidase
L3_121_000G1_scaffold_175_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8220..9185)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UI73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77730.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glycosyltransferases involved in cell wall biogenesis
L3_121_000G1_scaffold_175_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9142..11712)
DNA (2571bp) protein (857aa)
Predicted membrane protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPL6_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CCZ77729.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_121_000G1_scaffold_175_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11705..13534)
DNA (1830bp) protein (610aa)
Phosphoglycerol transferase and related proteins alkaline phosphatase superfamily n=2 Tax=root RepID=R5UHJ0_9FIRM
Phosphoglycerol transferase and related proteins alkaline phosphatase superfamily {ECO:0000313|EMBL:CCZ77728.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
sulfatase
L3_121_000G1_scaffold_175_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13638..13916)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAJ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77727.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_121_000G1_scaffold_175_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13936..14151)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V2V7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77726.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
XRE family transcriptional regulator protein
L3_121_000G1_scaffold_175_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14526..15794)
DNA (1269bp) protein (423aa)
Diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UI69_9FIRM
Diaminopimelate decarboxylase {ECO:0000313|EMBL:CCZ77725.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_121_000G1_scaffold_175_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15956..16681
DNA (726bp) protein (242aa)
Soluble lytic murein transglycosylase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPL1_9FIRM
Soluble lytic murein transglycosylase {ECO:0000313|EMBL:CCZ77724.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
L3_121_000G1_scaffold_175_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16759..17664)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77723.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Ribosomal protein S1
L3_121_000G1_scaffold_175_15
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18047..18637)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YF66_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA26123.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Predicted phosphoesterases, related to the Icc protein
L3_121_000G1_scaffold_175_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18637..20553)
DNA (1917bp) protein (639aa)
Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V2V1_9FIRM
Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein {ECO:0000313|EMBL:CCZ77721.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein
L3_121_000G1_scaffold_175_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20716..21297
DNA (582bp) protein (194aa)
Chemotaxis protein CheC inhibitor of MCP methylation n=1 Tax=Roseburia sp. CAG:18 RepID=R5UI63_9FIRM
Chemotaxis protein CheC inhibitor of MCP methylation {ECO:0000313|EMBL:CCZ77720.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Chemotaxis protein CheC, inhibitor of MCP methylation
L3_121_000G1_scaffold_175_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21298..21657
DNA (360bp) protein (120aa)
Two-component response regulator involved in modulation of flagellar n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPK7_9FIRM
Two-component response regulator involved in modulation of flagellar {ECO:0000313|EMBL:CCZ77719.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
L3_121_000G1_scaffold_175_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21689..21823
DNA (135bp) protein (45aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHI1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77718.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_121_000G1_scaffold_175_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21759..22412)
DNA (654bp) protein (218aa)
Negative regulator of genetic competence sporulation and motility n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAJ1_9FIRM
Negative regulator of genetic competence sporulation and motility {ECO:0000313|EMBL:CCZ77717.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Negative regulator of genetic competence, sporulation and motility
L3_121_000G1_scaffold_175_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22417..23004)
DNA (588bp) protein (196aa)
RNA polymerase factor sigma-70 (EC:2.7.7.6)
RNA polymerase factor sigma-70 n=2 Tax=root RepID=R5V2U7_9FIRM
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:CCZ77716.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_121_000G1_scaffold_175_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23012..23782)
DNA (771bp) protein (257aa)
rRNA methylase, putative, group 3 (EC:2.1.1.-)
Putative tRNA/rRNA methyltransferase n=1 Tax=Roseburia sp. CAG:197 RepID=R5ZBD3_9FIRM
Putative tRNA/rRNA methyltransferase {ECO:0000313|EMBL:CCZ77715.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_121_000G1_scaffold_175_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23794..24228)
DNA (435bp) protein (145aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Mini-ribonuclease 3 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPK5_9FIRM
putative ribonuclease III
L3_121_000G1_scaffold_175_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24225..25655)
DNA (1431bp) protein (477aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHH6_9FIRM
L3_121_000G1_scaffold_175_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25731..26270)
DNA (540bp) protein (180aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAI7_9FIRM
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
L3_121_000G1_scaffold_175_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26465..27448)
DNA (984bp) protein (328aa)
Phosphate acetyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V2U1_9FIRM
Phosphate acetyltransferase {ECO:0000313|EMBL:CCZ77711.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
phosphate acetyltransferase
L3_121_000G1_scaffold_175_27
unknown

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comp(27483..27668)
DNA (186bp) protein (62aa)

This feature has no annotations

L3_121_000G1_scaffold_175_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27643..28950)
DNA (1308bp) protein (436aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine sulfhydrolase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UI54_9FIRM
O-acetylhomoserine sulfhydrolase {ECO:0000313|EMBL:CCZ77710.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_121_000G1_scaffold_175_29
unknown

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comp(29210..29644)
DNA (435bp) protein (145aa)

This feature has no annotations

L3_121_000G1_scaffold_175_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29825..30880)
DNA (1056bp) protein (352aa)
Guanylate kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPK0_9FIRM
Guanylate kinase {ECO:0000313|EMBL:CCZ77709.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Guanylate kinase
Displaying items 1-30 of 106 in total

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