ggKbase home page

L3_121_000G1_scaffold_185

Search features with annotation key words

Displaying items 1-30 of 111 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_185_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(172..945)
DNA (774bp) protein (258aa)
RNA polymerase sigma-B factor n=203 Tax=Clostridium difficile RepID=C9XIC3_CLODC
RNA polymerase sigma-B factor
RNA polymerase sigma-B factor (Sigma-37) {ECO:0000313|EMBL:CCK97744.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_121_000G1_scaffold_185_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(945..1352)
DNA (408bp) protein (136aa)
Serine-protein kinase rsbW {ECO:0000313|EMBL:EQE58618.1}; EC=2.7.11.1 {ECO:0000313|EMBL:EQE58618.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Anti-sigma-B factor (Serine-protein kinase) n=178 Tax=Clostridium difficile RepID=C9XIC2_CLODC
anti-sigma-B factor (serine-protein kinase)
L3_121_000G1_scaffold_185_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1356..1673)
DNA (318bp) protein (106aa)
Anti-sigma factor antagonist n=11 Tax=Clostridium difficile RepID=T2XC16_CLODI
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
anti-sigma-B factor antagonist
L3_121_000G1_scaffold_185_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1685..1945)
DNA (261bp) protein (87aa)
Uncharacterized protein n=216 Tax=Clostridium difficile RepID=Q18C95_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG73158.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_121_000G1_scaffold_185_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1945..2241)
DNA (297bp) protein (99aa)
Uncharacterized protein n=214 Tax=Clostridium difficile RepID=Q18C91_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL28908.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_121_000G1_scaffold_185_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2310..4736)
DNA (2427bp) protein (809aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=156 Tax=Clostridium difficile RepID=Q18C90_CLOD6
L3_121_000G1_scaffold_185_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4756..6657)
DNA (1902bp) protein (634aa)
DNA gyrase subunit B {ECO:0000256|SAAS:SAAS00228809}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00048832};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
DNA gyrase subunit B n=128 Tax=Clostridium difficile RepID=C9XIB7_CLODC
gyrB; DNA gyrase subunit B
L3_121_000G1_scaffold_185_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6658..7773)
DNA (1116bp) protein (372aa)
DNA replication and repair protein RecF n=178 Tax=Clostridium difficile RepID=RECF_CLOD6
DNA replication and repair protein
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_121_000G1_scaffold_185_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7791..7997)
DNA (207bp) protein (69aa)
S4 domain protein n=211 Tax=Clostridium difficile RepID=T3IKA0_CLODC
RNA-binding mediating protein
Putative RNA-binding mediating protein {ECO:0000313|EMBL:CCK94035.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_121_000G1_scaffold_185_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8134..9342)
DNA (1209bp) protein (403aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
DNA polymerase III subunit beta n=2 Tax=Clostridium difficile RepID=C9XIB4_CLODC
dnaN; DNA polymerase III subunit beta
L3_121_000G1_scaffold_185_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9482..10801)
DNA (1320bp) protein (440aa)
Chromosomal replication initiator protein DnaA n=217 Tax=Clostridium difficile RepID=C9XIB3_CLODC
dnaA; chromosomal replication initiator protein
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_121_000G1_scaffold_185_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11675..12019
DNA (345bp) protein (115aa)
rnpA; ribonuclease P (EC:3.1.26.5)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Ribonuclease P protein component n=205 Tax=Clostridium difficile RepID=RNPA_CLOD6
L3_121_000G1_scaffold_185_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12045..12302
DNA (258bp) protein (86aa)
Putative membrane protein insertion efficiency factor n=64 Tax=Clostridium difficile RepID=G6BQI7_CLODI
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L3_121_000G1_scaffold_185_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12334..13041
DNA (708bp) protein (236aa)
Membrane insertase, YidC/Oxa1 family domain protein n=210 Tax=Clostridium difficile RepID=C9XSY0_CLODC
sporulation membrane protein
Sporulation membrane protein SpoIIIJ {ECO:0000313|EMBL:CCL31918.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_121_000G1_scaffold_185_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13010..13639
DNA (630bp) protein (210aa)
R3H domain protein n=188 Tax=Clostridium difficile RepID=G6BQI9_CLODI
SpoIIIJ-associated RNA/ssDNA-binding protein Jag
Putative SpoIIIJ-associated RNA/ssDNA-binding protein Jag {ECO:0000313|EMBL:CCL31917.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_121_000G1_scaffold_185_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13751..15130
DNA (1380bp) protein (460aa)
mnmE; tRNA modification GTPase TrmE (EC:3.6.-.-)
tRNA modification GTPase MnmE {ECO:0000255|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000255|HAMAP-Rule:MF_00379};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
tRNA modification GTPase MnmE n=126 Tax=Clostridium difficile RepID=MNME_CLOD6
L3_121_000G1_scaffold_185_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15225..17120
DNA (1896bp) protein (632aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=107 Tax=Clostridium difficile RepID=G6BQJ1_CLODI
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
mnmG; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
L3_121_000G1_scaffold_185_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17113..17832
DNA (720bp) protein (240aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Ribosomal RNA small subunit methyltransferase G n=83 Tax=Clostridium difficile RepID=T2T7C3_CLODI
gidB; 16S rRNA methyltransferase GidB
L3_121_000G1_scaffold_185_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17995..18780
DNA (786bp) protein (262aa)
ParB/RepB/Spo0J family partition domain protein n=211 Tax=Clostridium difficile RepID=C9XSX5_CLODC
stage 0 sporulation protein
Putative nucleoid occlusion protein {ECO:0000313|EMBL:EHJ28961.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_121_000G1_scaffold_185_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18915..19688
DNA (774bp) protein (258aa)
Sporulation initiation inhibitor protein soj n=59 Tax=Clostridium difficile RepID=T3FXG4_CLODC
soj; Transcriptional regulator, sporulationinitiation inhibitor, chromosome partitioning protein
Chromosome partitioning protein transcriptional regulator {ECO:0000313|EMBL:CDS90437.1}; Sporulation initiation inhibitor {ECO:0000313|EMBL:CKG65918.1}; Transcriptional regulator, sporulation initiation inhibitor, chromosome partitioning protein {ECO:0000313|EMBL:CDS90231.1}; Transcriptional regulator, sporulationinitiation inhibitor, chromosome partitioning protein {ECO:0000313|EMBL:CEK00393.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_121_000G1_scaffold_185_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19690..20553
DNA (864bp) protein (288aa)
Stage 0 sporulation protein J n=211 Tax=Clostridium difficile RepID=C9XSX3_CLODC
spo0J; stage 0 sporulation protein J
Stage 0 sporulation protein J {ECO:0000313|EMBL:EQG73108.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_121_000G1_scaffold_185_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20586..21728
DNA (1143bp) protein (381aa)
putative cysteine desulfurase family protein (EC:2.8.1.7)
Putative cysteine desulfurase family protein {ECO:0000313|EMBL:CCL31910.1}; EC=2.8.1.7 {ECO:0000313|EMBL:CCL31910.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Aminotransferase class-V family protein n=64 Tax=Clostridium difficile RepID=T3G1C6_CLODC
L3_121_000G1_scaffold_185_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22153..23052)
DNA (900bp) protein (300aa)
Bacterial regulatory helix-turn-helix , lysR family protein n=7 Tax=Clostridium difficile RepID=T2UA96_CLODI
Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:EQG73192.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
LysR family transcriptional regulator
L3_121_000G1_scaffold_185_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23322..24518
DNA (1197bp) protein (399aa)
aminotransferase (EC:2.6.1.-)
Alanine-glyoxylate amino-transferase family protein n=7 Tax=Clostridium difficile RepID=T2UBU9_CLODI
Alanine-glyoxylate amino-transferase family protein {ECO:0000313|EMBL:EQG73206.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_121_000G1_scaffold_185_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24586..25332
DNA (747bp) protein (249aa)
Cyclase family protein n=17 Tax=Clostridium difficile RepID=T2U9B1_CLODI
Cyclase family protein {ECO:0000313|EMBL:EQG73124.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
cyclase family protein
L3_121_000G1_scaffold_185_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25365..25868
DNA (504bp) protein (168aa)
Uncharacterized protein n=33 Tax=Clostridium difficile RepID=G6B9M1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ28954.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_121_000G1_scaffold_185_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26116..26949
DNA (834bp) protein (278aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase n=28 Tax=Clostridium difficile RepID=T2U984_CLODI
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase
L3_121_000G1_scaffold_185_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28467..29042)
DNA (576bp) protein (192aa)
Sporulation and spore germination family protein n=98 Tax=Clostridium difficile RepID=T2T7B8_CLODI
Putative exported protein {ECO:0000313|EMBL:CCL24153.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_121_000G1_scaffold_185_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29278..30594
DNA (1317bp) protein (439aa)
Tetratricopeptide repeat protein n=8 Tax=Clostridium difficile RepID=D5Q9P8_CLODI
transcriptional regulator
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EHJ28834.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_121_000G1_scaffold_185_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30669..31301
DNA (633bp) protein (211aa)
Uncharacterized protein n=187 Tax=Clostridium difficile RepID=C9XSW9_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE07684.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
Displaying items 1-30 of 111 in total

View Taxonomy