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L3_121_000G1_scaffold_195

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Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_195_1
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(148..642)
DNA (495bp) protein (165aa)
Thioesterase superfamily protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIK4_9FIRM
Thioesterase superfamily protein {ECO:0000313|EMBL:CCZ78088.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
thioesterase superfamily protein
L3_121_000G1_scaffold_195_2
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(809..1234)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NBA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF09851.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
L3_121_000G1_scaffold_195_3
Dehalobacter sp. CF, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1296..1568)
DNA (273bp) protein (91aa)
Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal n=1 Tax=Dehalobacter sp. CF RepID=K4KYA5_9FIRM
Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal
Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal {ECO:0000313|EMBL:AFV04057.1}; TaxID=1131462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter sp. CF.;"
L3_121_000G1_scaffold_195_4
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1561..2670)
DNA (1110bp) protein (370aa)
Uncharacterized conserved protein n=1 Tax=Eubacterium sp. CAG:603 RepID=R5NIJ5_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CCZ03563.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
hypothetical protein
L3_121_000G1_scaffold_195_5
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2715..3107)
DNA (393bp) protein (131aa)
Type III restriction-modification system methylation subunit (EC:2.1.1.72)
Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NCN5_9FIRM
Site-specific DNA-methyltransferase (Adenine-specific) {ECO:0000313|EMBL:CDF09853.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
L3_121_000G1_scaffold_195_6
[Bacteroides] pectinophilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3302..3409)
DNA (108bp) protein (36aa)
Putative uncharacterized protein n=1 Tax=[Bacteroides] pectinophilus ATCC 43243 RepID=B7ARB5_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEC58237.1}; TaxID=483218 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="[Bacteroides] pectinophilus ATCC 43243.;"
L3_121_000G1_scaffold_195_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3828..4904)
DNA (1077bp) protein (359aa)
Peptide chain release factor 1 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJC6_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
peptide chain release factor 1
L3_121_000G1_scaffold_195_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4908..5759)
DNA (852bp) protein (284aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Release factor glutamine methyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQT6_9FIRM
protein-(glutamine-N5) methyltransferase, release factor-specific
L3_121_000G1_scaffold_195_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5756..6733)
DNA (978bp) protein (326aa)
Predicted metal-dependent enzyme n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIM3_9FIRM
Predicted metal-dependent enzyme {ECO:0000313|EMBL:CCZ78118.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted metal-dependent enzyme
L3_121_000G1_scaffold_195_10
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6770..6970)
DNA (201bp) protein (67aa)
50S ribosomal protein L31 n=6 Tax=Clostridiales RepID=C4Z908_EUBR3
ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_121_000G1_scaffold_195_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7166..8650)
DNA (1485bp) protein (495aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Transcription termination factor Rho n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3X3_9FIRM
transcription termination factor Rho
L3_121_000G1_scaffold_195_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8821..10026
DNA (1206bp) protein (402aa)
Malate dehydrogenase (Oxaloacetate-decarboxylating) n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJC2_9FIRM
Malate dehydrogenase (Oxaloacetate-decarboxylating) {ECO:0000313|EMBL:CCZ78115.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
malate dehydrogenase (oxaloacetate-decarboxylating)
L3_121_000G1_scaffold_195_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10016..10933
DNA (918bp) protein (306aa)
Putative radical SAM protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQT3_9FIRM
Putative radical SAM protein {ECO:0000313|EMBL:CCZ78114.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative radical SAM protein
L3_121_000G1_scaffold_195_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10926..11441
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIL9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78113.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_121_000G1_scaffold_195_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11450..12019)
DNA (570bp) protein (190aa)
Nitrilotriacetate monooxygenase component B n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBK8_9FIRM
Nitrilotriacetate monooxygenase component B {ECO:0000313|EMBL:CCZ78112.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
nitrilotriacetate monooxygenase component B
L3_121_000G1_scaffold_195_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12061..13533)
DNA (1473bp) protein (491aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3X0_9FIRM
L3_121_000G1_scaffold_195_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13534..14370)
DNA (837bp) protein (279aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJB9_9FIRM
L3_121_000G1_scaffold_195_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14536..15378
DNA (843bp) protein (281aa)
Positive regulator for rhaBAD operon n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQT0_9FIRM
Positive regulator for rhaBAD operon {ECO:0000313|EMBL:CCZ78109.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
positive regulator for rhaBAD operon
L3_121_000G1_scaffold_195_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15391..17064)
DNA (1674bp) protein (558aa)
Inorganic pyrophosphatase/exopolyphosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase/exopolyphosphatase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIL7_9FIRM
Inorganic pyrophosphatase/exopolyphosphatase {ECO:0000313|EMBL:CCZ78108.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_121_000G1_scaffold_195_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17166..17936)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78107.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_121_000G1_scaffold_195_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18057..18320)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3W7_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
rpsT; 30S ribosomal protein S20
L3_121_000G1_scaffold_195_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18484..19467
DNA (984bp) protein (328aa)
DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III delta subunit n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJB5_9FIRM
DNA polymerase III delta subunit {ECO:0000313|EMBL:CCZ78105.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_121_000G1_scaffold_195_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19474..21876)
DNA (2403bp) protein (801aa)
Putative integral membrane protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQS6_9FIRM
Putative integral membrane protein {ECO:0000313|EMBL:CCZ78104.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA internalization-related competence protein ComEC/Rec2
L3_121_000G1_scaffold_195_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21888..22829)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78103.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_121_000G1_scaffold_195_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22840..24291)
DNA (1452bp) protein (484aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Signal transduction histidine kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBK2_9FIRM
signal transduction histidine kinase
L3_121_000G1_scaffold_195_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24316..25008)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3W4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78101.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_121_000G1_scaffold_195_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25017..25616)
DNA (600bp) protein (200aa)
ComEA protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJB0_9FIRM
ComEA protein {ECO:0000313|EMBL:CCZ78100.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
competence protein ComEA helix-hairpin-helix repeat region
L3_121_000G1_scaffold_195_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25698..26897)
DNA (1200bp) protein (400aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
acetylornithine aminotransferase apoenzyme (EC:2.6.1.11)
Acetylornithine aminotransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQS3_9FIRM
L3_121_000G1_scaffold_195_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26921..27814)
DNA (894bp) protein (298aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIL1_9FIRM
L3_121_000G1_scaffold_195_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27825..28283)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBJ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78097.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
Displaying items 1-30 of 108 in total

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