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L3_121_000G1_scaffold_220

Search features with annotation key words

Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_220_1
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(300..836)
DNA (537bp) protein (179aa)
VanZ-like protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PPX9_9FIRM
VanZ-like protein {ECO:0000313|EMBL:ERK52565.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
VanZ family protein
L3_121_000G1_scaffold_220_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(871..2688)
DNA (1818bp) protein (606aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMQ2_9FIRM
23S rRNA m(5)U-1939 methyltransferase {ECO:0000313|EMBL:CCZ79548.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_121_000G1_scaffold_220_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2719..3663)
DNA (945bp) protein (315aa)
HD-superfamily hydrolase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UV31_9FIRM
HD-superfamily hydrolase {ECO:0000313|EMBL:CCZ79549.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
uncharacterized domain HDIG
L3_121_000G1_scaffold_220_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3685..4974)
DNA (1290bp) protein (430aa)
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNC5_9FIRM
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain {ECO:0000313|EMBL:CCZ79550.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
HtrA-like serine protease (with PDZ domain)
L3_121_000G1_scaffold_220_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5062..7443
DNA (2382bp) protein (794aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Endonuclease MutS2 n=1 Tax=Roseburia sp. CAG:18 RepID=R5V809_9FIRM
DNA mismatch repair protein
L3_121_000G1_scaffold_220_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7480..8175
DNA (696bp) protein (232aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFS3_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CCZ79552.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_121_000G1_scaffold_220_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8172..9614
DNA (1443bp) protein (481aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Signal transduction histidine kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMQ6_9FIRM
Signal transduction histidine kinase
L3_121_000G1_scaffold_220_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9633..10601)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UV35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79554.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_121_000G1_scaffold_220_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10685..12484)
DNA (1800bp) protein (600aa)
aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UND0_9FIRM
Aspartate--tRNA ligase {ECO:0000313|EMBL:CCZ79555.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_121_000G1_scaffold_220_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12512..13771)
DNA (1260bp) protein (420aa)
Histidine--tRNA ligase n=2 Tax=root RepID=R5V812_9FIRM
Histidine--tRNA ligase {ECO:0000313|EMBL:CCZ79556.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
histidine--tRNA ligase
L3_121_000G1_scaffold_220_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14038..14421)
DNA (384bp) protein (128aa)
Redox-active protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFS5_9FIRM
Redox-active protein {ECO:0000313|EMBL:CCZ79557.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_121_000G1_scaffold_220_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14470..15984)
DNA (1515bp) protein (505aa)
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases (EC:1.3.99.22)
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMQ8_9FIRM
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases {ECO:0000313|EMBL:CCZ79558.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_121_000G1_scaffold_220_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15981..16610)
DNA (630bp) protein (210aa)
Zn-dependent hydrolases including glyoxylases n=1 Tax=Roseburia sp. CAG:18 RepID=R5UV39_9FIRM
Zn-dependent hydrolases including glyoxylases {ECO:0000313|EMBL:CCZ79559.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Zn-dependent hydrolases, including glyoxylases
L3_121_000G1_scaffold_220_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16635..18974)
DNA (2340bp) protein (780aa)
(P)ppGpp synthetase I SpoT/RelA n=1 Tax=Roseburia sp. CAG:18 RepID=R5UND3_9FIRM
(P)ppGpp synthetase I SpoT/RelA {ECO:0000313|EMBL:CCZ79560.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
(p)ppGpp synthetase I, SpoT/RelA
L3_121_000G1_scaffold_220_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19054..19914)
DNA (861bp) protein (287aa)
Acetyltransferase GNAT family n=1 Tax=Roseburia sp. CAG:18 RepID=R5V815_9FIRM
Acetyltransferase GNAT family {ECO:0000313|EMBL:CCZ79561.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
guanosine monophosphate synthetase GuaA
L3_121_000G1_scaffold_220_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19964..20482)
DNA (519bp) protein (173aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFS9_9FIRM
L3_121_000G1_scaffold_220_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20518..21942)
DNA (1425bp) protein (475aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMR2_9FIRM
L3_121_000G1_scaffold_220_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21945..23000)
DNA (1056bp) protein (352aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UV42_9FIRM
L3_121_000G1_scaffold_220_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23229..23579)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UND8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79565.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_121_000G1_scaffold_220_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23742..24272)
DNA (531bp) protein (177aa)
Ribosome-associated protein Y (PSrp-1) n=1 Tax=Roseburia sp. CAG:18 RepID=R5V817_9FIRM
Ribosome-associated protein Y (PSrp-1) {ECO:0000313|EMBL:CCZ79566.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ribosome-associated protein Y (PSrp-1)
L3_121_000G1_scaffold_220_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24386..25345)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFT1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79567.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_121_000G1_scaffold_220_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25342..25824)
DNA (483bp) protein (161aa)
RNA polymerase sigma factor n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMR5_9FIRM
RNA polymerase sigma factor {ECO:0000313|EMBL:CCZ79568.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ECF subfamily RNA polymerase sigma-24 subunit
L3_121_000G1_scaffold_220_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25961..26773
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UV46_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79569.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_121_000G1_scaffold_220_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27286..29256)
DNA (1971bp) protein (657aa)
ATPase components of ABC transporters with duplicated ATPase domains n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNE3_9FIRM
ATPase components of ABC transporters with duplicated ATPase domains {ECO:0000313|EMBL:CCZ79570.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ATPase components of ABC transporters with duplicated ATPase domains
L3_121_000G1_scaffold_220_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29268..30584)
DNA (1317bp) protein (439aa)
Predicted ATPase (AAA+ superfamily) n=1 Tax=Roseburia sp. CAG:18 RepID=R5V820_9FIRM
Predicted ATPase (AAA+ superfamily) {ECO:0000313|EMBL:CCZ79571.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted ATPase (AAA+ superfamily)
L3_121_000G1_scaffold_220_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30676..32007)
DNA (1332bp) protein (444aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Signal transduction histidine kinase (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFT5_9FIRM
L3_121_000G1_scaffold_220_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32017..32685)
DNA (669bp) protein (223aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMR7_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CCZ79573.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_121_000G1_scaffold_220_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32857..33510)
DNA (654bp) protein (218aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Roseburia sp. CAG:18 RepID=R5UV51_9FIRM
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
phosphate uptake regulator, PhoU
L3_121_000G1_scaffold_220_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33510..34271)
DNA (762bp) protein (254aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Phosphate transport system ATP-binding protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNE8_9FIRM
phosphate transport system ATP-binding protein
L3_121_000G1_scaffold_220_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34820..35506)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V824_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79576.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted membrane protein
Displaying items 1-30 of 99 in total

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