ggKbase home page

L3_121_000G1_scaffold_253

Search features with annotation key words

Displaying items 1-30 of 120 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_253_1
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

448..1425
DNA (978bp) protein (326aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
tRNA-dihydrouridine synthase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IKH2_9CLOT
dihydrouridine synthase, DuS
L3_121_000G1_scaffold_253_2
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1693..2196
DNA (504bp) protein (168aa)
Transcription elongation factor GreA n=1 Tax=Clostridium sp. CAG:7 RepID=R5J114_9CLOT
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Transcription elongation factor
L3_121_000G1_scaffold_253_3
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2253..3440
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J0U2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42621.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
DNA-binding transcriptional activator of the SARP family
L3_121_000G1_scaffold_253_4
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3416..4573)
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IKL1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42620.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_121_000G1_scaffold_253_5
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4895..10969
DNA (6075bp) protein (2025aa)
Uncharacterized protein (Fragment) n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9YV88_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ15963.1}; Flags: Fragment;; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
cell wall/surface repeat-containing protein
L3_121_000G1_scaffold_253_6
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11334..12194
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9KY90_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS51253.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
hypothetical protein
L3_121_000G1_scaffold_253_7
Blautia sp. CAG:237, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12298..12777
DNA (480bp) protein (160aa)
Transposase and inactivated derivatives n=1 Tax=Blautia sp. CAG:237 RepID=R6LUL8_9FIRM
Transposase and inactivated derivatives {ECO:0000313|EMBL:CDB77722.1}; TaxID=1262755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:237.;"
Transposase and inactivated derivatives
L3_121_000G1_scaffold_253_8
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

Not on your lists

12788..12949
DNA (162bp) protein (54aa)
Transposase n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5GUK7_9FIRM
Transposase {ECO:0000313|EMBL:CCY21020.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
transposase, IS605 OrfB family, central region
L3_121_000G1_scaffold_253_9
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

Not on your lists

12894..13715
DNA (822bp) protein (274aa)
Transposase n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5GUK7_9FIRM
Transposase {ECO:0000313|EMBL:CCY21020.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
transposase, IS605 OrfB family, central region
L3_121_000G1_scaffold_253_10
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14374..15036
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9X8Z4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ11766.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
Retron-type reverse transcriptase
L3_121_000G1_scaffold_253_11
Lachnospiraceae bacterium TWA4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15020..15274
DNA (255bp) protein (85aa)
TWA4_scaffold00001, whole genome shotgun sequence {ECO:0000313|EMBL:KIR02558.1}; TaxID=1392836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium TWA4.;"
Retron-type reverse transcriptase
L3_121_000G1_scaffold_253_12
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16061..21292
DNA (5232bp) protein (1744aa)
Putative uncharacterized protein (Fragment) n=7 Tax=Clostridium clostridioforme RepID=G5I0Q3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ63220.1}; Flags: Fragment;; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_121_000G1_scaffold_253_13
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21639..22151
DNA (513bp) protein (171aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
5-(carboxyamino)imidazole ribonucleotide mutase (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Clostridium sp. CAG:7 RepID=R5ICL8_9CLOT
L3_121_000G1_scaffold_253_14
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22195..23229
DNA (1035bp) protein (345aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Clostridium sp. CAG:58 RepID=R6RF43_9CLOT
L3_121_000G1_scaffold_253_15
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23223..23816
DNA (594bp) protein (198aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D492_9CLOT
L3_121_000G1_scaffold_253_16
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23827..25101
DNA (1275bp) protein (425aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IHX8_9CLOT
L3_121_000G1_scaffold_253_17
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25411..26187
DNA (777bp) protein (259aa)
Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family (EC:3.1.3.25)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IT49_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39906.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L3_121_000G1_scaffold_253_18
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26436..27404
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IT60_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39916.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
sugar isomerase (SIS)
L3_121_000G1_scaffold_253_19
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27508..28317)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IHZ2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39919.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
histidinol phosphate phosphatase
L3_121_000G1_scaffold_253_20
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28630..29469)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IT63_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39921.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ABC transporter permease
L3_121_000G1_scaffold_253_21
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29482..30363)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JN90_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB62765.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
permease of ABC-type sugar transporter
L3_121_000G1_scaffold_253_22
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30444..31802)
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5II23_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39949.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ABC transporter extracellular-binding protein yurOprecursor
L3_121_000G1_scaffold_253_23
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32096..32806)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5II35_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39959.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
FadR family transcriptional regulator
L3_121_000G1_scaffold_253_24
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32910..33779)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5II41_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39964.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
sugar kinase
L3_121_000G1_scaffold_253_25
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33922..34755)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5II51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39974.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
xylose isomerase domain-containing protein TIM barrel
L3_121_000G1_scaffold_253_26
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35114..35779
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5ID29_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39983.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_121_000G1_scaffold_253_27
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36005..36697
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5ITC8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39986.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
aspartate dehydrogenase
L3_121_000G1_scaffold_253_28
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36877..38115)
DNA (1239bp) protein (413aa)
Putative uncharacterized protein n=2 Tax=Clostridium RepID=G5HR84_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE96222.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
Phage integrase family.
L3_121_000G1_scaffold_253_29
unknown

Not on your lists

38539..38754
DNA (216bp) protein (72aa)

This feature has no annotations

L3_121_000G1_scaffold_253_30
unknown

Not on your lists

38830..39006
DNA (177bp) protein (59aa)

This feature has no annotations

Displaying items 1-30 of 120 in total

View Taxonomy