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L3_121_000G1_scaffold_256

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_256_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..5118)
DNA (5118bp) protein (1706aa)
Cell surface protein with LPXTG anchor n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MHQ9_BIFBI
Cell surface protein with LPXTG anchor {ECO:0000313|EMBL:EKF16642.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
cell surface protein with LPXTG anchor
L3_121_000G1_scaffold_256_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5796..6347
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DWV1_BIFBI
Integrase, catalytic region {ECO:0000313|EMBL:KFI42108.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
integrase, catalytic region
L3_121_000G1_scaffold_256_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6533..7660)
DNA (1128bp) protein (376aa)
ABC transporter ATP-binding protein (EC:3.6.3.20)
Cellobiose transport system, ATP-binding protein n=4 Tax=Bifidobacterium bifidum RepID=E3ERG6_BIFBS
Cellobiose transport system, ATP-binding protein {ECO:0000313|EMBL:ADO53970.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_000G1_scaffold_256_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8116..9027)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2C1G4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42110.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
CTP synthase
L3_121_000G1_scaffold_256_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9575..12046
DNA (2472bp) protein (824aa)
pkwA; putative serine/threonine-protein kinase (EC:2.7.11.1)
Kinase domain protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DRT4_BIFBI
Kinase domain protein {ECO:0000313|EMBL:ERI84292.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ99020.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_121_000G1_scaffold_256_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12065..13171
DNA (1107bp) protein (369aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6GP79_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB23046.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_000G1_scaffold_256_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13789..15312
DNA (1524bp) protein (508aa)
lytic transglycosylase n=1 Tax=Bifidobacterium bifidum RepID=UPI00036141EC
Uncharacterized protein {ECO:0000313|EMBL:KFI42113.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
collagen-binding domain
L3_121_000G1_scaffold_256_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


15324..16274
DNA (951bp) protein (317aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IQY0_BIFBI
ksgA; Dimethyladenosine transferase
L3_121_000G1_scaffold_256_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16271..17311
DNA (1041bp) protein (347aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase n=1 Tax=Bifidobacterium bifidum RepID=UPI00036CFC68
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
L3_121_000G1_scaffold_256_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17353..17979
DNA (627bp) protein (209aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=I3WKK6_BIFBI
hypothetical protein
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:ERI84286.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ99025.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_121_000G1_scaffold_256_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18071..19498)
DNA (1428bp) protein (476aa)
RNA nucleotidyltransferase {ECO:0000313|EMBL:KFI42117.1}; EC=2.7.7.72 {ECO:0000313|EMBL:KFI42117.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
RNA nucleotidyltransferase (EC:2.7.7.72)
tRNA adenylyltransferase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CIC8_BIFBI
L3_121_000G1_scaffold_256_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19575..20228
DNA (654bp) protein (218aa)
Phosphohydrolase (Nudix family protein) n=8 Tax=Bifidobacterium RepID=E3ERH5_BIFBS
NTP pyrophosphohydrolase
NTP pyrophosphohydrolase {ECO:0000313|EMBL:AFL05421.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_121_000G1_scaffold_256_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20327..22504
DNA (2178bp) protein (726aa)
Dyp-type peroxidase family protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CJQ4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ99028.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_121_000G1_scaffold_256_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22501..26916
DNA (4416bp) protein (1472aa)
Putative virulence factor protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HB21_BIFBI
Putative virulence factor protein {ECO:0000313|EMBL:EKE51221.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_121_000G1_scaffold_256_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27110..28276
DNA (1167bp) protein (389aa)
trxB; thioredoxin-disulfide reductase (EC:1.8.1.9)
Thioredoxin-disulfide reductase {ECO:0000313|EMBL:AFL05424.1}; EC=1.8.1.9 {ECO:0000313|EMBL:AFL05424.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Thioredoxin-disulfide reductase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WKL1_BIFBI
L3_121_000G1_scaffold_256_16
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28744..30108)
DNA (1365bp) protein (455aa)
Chromosome partitioning protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GMH3_9BIFI
Chromosome partitioning protein {ECO:0000313|EMBL:CDB22869.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
chromosome partitioning protein
L3_121_000G1_scaffold_256_17
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30112..31095)
DNA (984bp) protein (328aa)
Chromosome partitioning protein ParA n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GBQ1_9BIFI
Chromosome partitioning protein ParA {ECO:0000313|EMBL:CDB22868.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
parA; chromosome partitioning protein ParA
L3_121_000G1_scaffold_256_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31557..32255)
DNA (699bp) protein (233aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H9F2_9BIFI
gidB; methyl transferase
L3_121_000G1_scaffold_256_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32252..32782)
DNA (531bp) protein (177aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=K2HB25_BIFBI
hypothetical protein
R3H domain protein {ECO:0000313|EMBL:ERI84277.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ99034.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_121_000G1_scaffold_256_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32864..33874)
DNA (1011bp) protein (337aa)
Membrane protein n=5 Tax=Bifidobacterium RepID=I3WKL6_BIFBI
oxaA; membrane protein
Membrane protein insertase, YidC/Oxa1 family {ECO:0000313|EMBL:ERI84276.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ99035.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_121_000G1_scaffold_256_21
unknown

Not on your lists

34204..34620
DNA (417bp) protein (139aa)

This feature has no annotations

L3_121_000G1_scaffold_256_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(34577..34711)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=8 Tax=Bifidobacterium RepID=E3ERI4_BIFBS
rpmH; 50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_000G1_scaffold_256_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35064..36653
DNA (1590bp) protein (530aa)
Chromosomal replication initiator protein DnaA n=2 Tax=Bifidobacterium bifidum RepID=E4NXQ0_BIFBP
dnaA; Chromosomal replication initiator protein DnaA
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_121_000G1_scaffold_256_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37254..38378
DNA (1125bp) protein (375aa)
dnaN; DnaN DNA polymerase III, beta chain (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
DNA polymerase III subunit beta n=7 Tax=Bifidobacterium RepID=E3ENC8_BIFBS
L3_121_000G1_scaffold_256_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38517..39779
DNA (1263bp) protein (421aa)
DNA replication and repair protein RecF n=2 Tax=Bifidobacterium RepID=K2HXR7_BIFBI
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
recF; DNA replication and repair protein
L3_121_000G1_scaffold_256_26
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

39776..40348
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GEP4_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22860.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L3_121_000G1_scaffold_256_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40550..42661
DNA (2112bp) protein (704aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
gyrB; gyrB DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=8 Tax=Bifidobacterium RepID=E3END1_BIFBS
L3_121_000G1_scaffold_256_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


42791..45523
DNA (2733bp) protein (911aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFE1_BIFBI
L3_121_000G1_scaffold_256_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

45583..46140
DNA (558bp) protein (186aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXQ6_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22857.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_000G1_scaffold_256_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(46504..46980)
DNA (477bp) protein (159aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4VCC4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR51239.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
alpha-L-arabinofuranosidase
Displaying items 1-30 of 79 in total

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