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L3_121_000G1_scaffold_545

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Displaying items 1-30 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_545_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

412..957
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67735.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_121_000G1_scaffold_545_2
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1290..1850
DNA (561bp) protein (187aa)
Sigma-70 family RNA polymerase sigma factor n=2 Tax=Clostridiales RepID=N2A1N3_9CLOT
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EMZ19910.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
sigG; RNA polymerase sigma-G factor
L3_121_000G1_scaffold_545_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2345..3199)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67738.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
AraC-type DNA-binding domain-containing proteins
L3_121_000G1_scaffold_545_4
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3484..5385
DNA (1902bp) protein (634aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WVQ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX69369.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
beta-galactosidase, large subunit
L3_121_000G1_scaffold_545_5
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5369..6316
DNA (948bp) protein (316aa)
Beta-galactosidase {ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|SAAS:SAAS00046613};; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Beta galactosidase small chain. (EC:3.2.1.23)
Beta galactosidase small subunit n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WVQ4_9FIRM
L3_121_000G1_scaffold_545_6
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6569..7369
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UAS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68276.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
transcriptional regulator, AraC family
L3_121_000G1_scaffold_545_7
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7478..8251
DNA (774bp) protein (258aa)
Predicted DNA-binding proteins n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UHI0_9FIRM
Predicted DNA-binding proteins {ECO:0000313|EMBL:CCZ68277.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted DNA-binding proteins
L3_121_000G1_scaffold_545_8
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8461..9951
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TR58_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68278.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
conserved hypothetical protein TIGR02677
L3_121_000G1_scaffold_545_9
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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9948..11093
DNA (1146bp) protein (382aa)
TIGR02678 family protein n=3 Tax=Lachnospiraceae RepID=A7B1U4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46562.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
conserved hypothetical protein TIGR02678
L3_121_000G1_scaffold_545_10
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11044..15177
DNA (4134bp) protein (1378aa)
TIGR02680 family protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TRD9_9FIRM
TIGR02680 family protein {ECO:0000313|EMBL:CCZ68280.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
conserved hypothetical protein TIGR02680
L3_121_000G1_scaffold_545_11
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15174..16493
DNA (1320bp) protein (440aa)
TIGR02679 family protein n=2 Tax=Lachnospiraceae RepID=V8BY62_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46560.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_121_000G1_scaffold_545_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16495..17727
DNA (1233bp) protein (411aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BXC1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46559.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_121_000G1_scaffold_545_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17712..18128
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1U8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN78220.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_121_000G1_scaffold_545_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18364..19902
DNA (1539bp) protein (513aa)
Asparagine synthase (glutamine-hydrolyzing) (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1U9_RUMGN
Putative asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:EDN78221.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_121_000G1_scaffold_545_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19956..21389)
DNA (1434bp) protein (478aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BX89_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46556.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
pyridoxal-dependent decarboxylase
L3_121_000G1_scaffold_545_16
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21514..22428
DNA (915bp) protein (305aa)
LysR substrate binding domain protein n=3 Tax=Lachnospiraceae RepID=A7B1V1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46555.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
LysR family transcriptional regulator
L3_121_000G1_scaffold_545_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22431..23513)
DNA (1083bp) protein (361aa)
Dihydrodipicolinate reductase domain protein n=3 Tax=Lachnospiraceae RepID=A7B1V2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46554.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_121_000G1_scaffold_545_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23744..25084
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1V3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN78225.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_121_000G1_scaffold_545_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25101..26057
DNA (957bp) protein (319aa)
Peptidase, U32 family n=3 Tax=Lachnospiraceae RepID=A7B1V4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD19418.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Collagenase and related proteases
L3_121_000G1_scaffold_545_20
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26051..27064)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UAU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68291.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_121_000G1_scaffold_545_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27226..27771
DNA (546bp) protein (182aa)
BioY family protein n=2 Tax=Clostridiales RepID=A7B1X3_RUMGN
BioY family protein {ECO:0000313|EMBL:EDN78245.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_121_000G1_scaffold_545_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27841..28272
DNA (432bp) protein (144aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B1X4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46538.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_121_000G1_scaffold_545_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28393..29487
DNA (1095bp) protein (365aa)
DNA-binding helix-turn-helix protein n=3 Tax=Lachnospiraceae RepID=A7B1X5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46537.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
XRE family transcriptional regulator
L3_121_000G1_scaffold_545_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29538..30587)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1X6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN78248.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_121_000G1_scaffold_545_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30612..30956)
DNA (345bp) protein (115aa)
Hydrogenase nickel insertion protein HypA n=3 Tax=Lachnospiraceae RepID=V8BY34_RUMGN
Hydrogenase nickel insertion protein HypA {ECO:0000313|EMBL:ETD19401.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hydrogenase nickel incorporation protein HypA
L3_121_000G1_scaffold_545_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30968..33664)
DNA (2697bp) protein (899aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1X8_RUMGN
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EDN78250.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
NADPH-dependent glutamate synthase GltA2
L3_121_000G1_scaffold_545_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33661..34347)
DNA (687bp) protein (229aa)
Hydrogenase accessory protein HypB n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1X9_RUMGN
Hydrogenase accessory protein HypB {ECO:0000313|EMBL:EDN78251.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hydrogenase accessory protein HypB
L3_121_000G1_scaffold_545_28
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34575..36179)
DNA (1605bp) protein (535aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
phosphoenolpyruvate carboxykinase (ATP) (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1Y0_RUMGN
L3_121_000G1_scaffold_545_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


36548..36697
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1Y2_RUMGN
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
50S ribosomal protein L33
L3_121_000G1_scaffold_545_30
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36719..36928
DNA (210bp) protein (70aa)
Protein translocase subunit SecE n=2 Tax=Clostridiales RepID=A7B1Y3_RUMGN
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
protein translocase subunit secE/sec61 gamma
Displaying items 1-30 of 96 in total

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