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L3_121_000G1_scaffold_649

Search features with annotation key words

Displaying items 1-30 of 127 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_649_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..898)
DNA (897bp) protein (299aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Threonine--tRNA ligase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9V1_BIFBI
thrS; threonyl-tRNA synthetase
L3_121_000G1_scaffold_649_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1110..2639)
DNA (1530bp) protein (510aa)
Sodium:dicarboxylate symporter n=2 Tax=Bifidobacterium bifidum RepID=E3EP63_BIFBS
sodium:dicarboxylate symporter
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:ADO53170.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_000G1_scaffold_649_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3258..4823
DNA (1566bp) protein (522aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=E4V9V3_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI43061.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_121_000G1_scaffold_649_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5525..6358
DNA (834bp) protein (278aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=I3WI26_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53172.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_000G1_scaffold_649_5
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6480..7424)
DNA (945bp) protein (315aa)
bacA; bacitracin resistance protein BacA (EC:3.6.1.27)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Undecaprenyl-diphosphatase n=8 Tax=Bifidobacterium RepID=E3EP66_BIFBS
L3_121_000G1_scaffold_649_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7563..8354
DNA (792bp) protein (264aa)
Fructosamine kinase family protein n=6 Tax=Bifidobacterium RepID=E4NX18_BIFBP
fructosamine-3-kinase
Fructosamine kinase family protein {ECO:0000313|EMBL:CDB23050.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_000G1_scaffold_649_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8490..9641)
DNA (1152bp) protein (384aa)
Chaperone protein DnaJ n=9 Tax=Bifidobacterium RepID=E3EQ25_BIFBS
dnaJ; molecular chaperone DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_000G1_scaffold_649_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9694..10950)
DNA (1257bp) protein (419aa)
HrcA Heat-inducible transcription repressor n=2 Tax=Bifidobacterium bifidum RepID=E4NX20_BIFBP
hrcA; heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_121_000G1_scaffold_649_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11298..13406
DNA (2109bp) protein (703aa)
Transketolase {ECO:0000313|EMBL:EFR50401.1}; EC=2.2.1.1 {ECO:0000313|EMBL:EFR50401.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Transketolase n=3 Tax=Bifidobacterium bifidum RepID=E3EQ27_BIFBS
tkt; transketolase
L3_121_000G1_scaffold_649_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13539..14642
DNA (1104bp) protein (368aa)
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Transaldolase n=8 Tax=Bifidobacterium bifidum RepID=E3EQ28_BIFBS
tal; transaldolase
L3_121_000G1_scaffold_649_11
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14884..15696
DNA (813bp) protein (271aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=K2H8H6_BIFBI
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:CDB22295.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_000G1_scaffold_649_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15945..17273
DNA (1329bp) protein (443aa)
Branched-chain amino acid transport system II carrier protein n=2 Tax=Bifidobacterium bifidum RepID=E4V9W2_BIFBI
Branched-chain amino acid transport system II carrier protein {ECO:0000313|EMBL:EFR50404.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
branched-chain amino acid transport system II carrier protein
L3_121_000G1_scaffold_649_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18140..19501)
DNA (1362bp) protein (454aa)
Na+ driven multidrug efflux pump n=2 Tax=Bifidobacterium RepID=K2I667_BIFBI
Na+ driven multidrug efflux pump {ECO:0000313|EMBL:EKE50294.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Na+ driven multidrug efflux pump
L3_121_000G1_scaffold_649_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19498..20334)
DNA (837bp) protein (279aa)
putative hydrolase (EC:3.1.3.18)
Cof-like hydrolase n=5 Tax=Bifidobacterium RepID=E4V9W6_BIFBI
Putative hydrolase {ECO:0000313|EMBL:CDB21999.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_000G1_scaffold_649_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20389..21339)
DNA (951bp) protein (317aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L-lactate dehydrogenase (EC:1.1.1.27)
L-lactate dehydrogenase n=2 Tax=Bifidobacterium bifidum RepID=E4V9W7_BIFBI
L3_121_000G1_scaffold_649_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21447..21695)
DNA (249bp) protein (83aa)
Preprotein translocase, SecG subunit n=8 Tax=Bifidobacterium RepID=E3EQ35_BIFBS
secG; protein translocase subunit SecG
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:ADO53185.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_000G1_scaffold_649_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21774..22568)
DNA (795bp) protein (265aa)
tpiA; triose-phosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Triosephosphate isomerase n=6 Tax=Bifidobacterium bifidum RepID=E3EQ36_BIFBS
L3_121_000G1_scaffold_649_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22637..23842)
DNA (1206bp) protein (402aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Phosphoglycerate kinase n=3 Tax=Bifidobacterium bifidum RepID=E3EQ37_BIFBS
L3_121_000G1_scaffold_649_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24000..24971)
DNA (972bp) protein (324aa)
Putative sporulation transcription regulator WhiA n=7 Tax=Bifidobacterium RepID=E3EQ38_BIFBS
hypothetical protein
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_121_000G1_scaffold_649_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25138..26082)
DNA (945bp) protein (315aa)
UPF0042 nucleotide-binding protein BBIF_0984 n=2 Tax=Bifidobacterium bifidum RepID=E3EQ39_BIFBS
ATP-binding protein
Nucleotide-binding protein BBIF_0984 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_121_000G1_scaffold_649_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26082..27044)
DNA (963bp) protein (321aa)
aroE; shikimate 5-dehydrogenase AroE (EC:1.1.1.25)
AroE Shikimate 5-dehydrogenase n=2 Tax=Bifidobacterium RepID=E4NX33_BIFBP
AroE Shikimate 5-dehydrogenase {ECO:0000313|EMBL:CDB23224.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_000G1_scaffold_649_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27238..29622)
DNA (2385bp) protein (795aa)
UvrABC system protein C n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9X4_BIFBI
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
uvrC; excinuclease ABC subunit C
L3_121_000G1_scaffold_649_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29577..32567)
DNA (2991bp) protein (997aa)
UvrABC system protein A n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CEG6_BIFBI
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; UvrABC system protein A; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
uvrA; excinuclease ABC subunit A
L3_121_000G1_scaffold_649_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32814..33455)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DLJ6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI43082.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L3_121_000G1_scaffold_649_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33807..33914)
DNA (108bp) protein (36aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H8I9_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50306.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_121_000G1_scaffold_649_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34354..35019
DNA (666bp) protein (222aa)
two-component response regulator (EC:2.7.13.3)
Two-component response regulator n=5 Tax=Bifidobacterium bifidum RepID=E4NX38_BIFBP
Two-component response regulator {ECO:0000313|EMBL:EKF15324.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_121_000G1_scaffold_649_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35016..36455
DNA (1440bp) protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
sensory transduction protein kinase (EC:2.7.13.3)
Sensory transduction protein kinase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GFP6_9BIFI
L3_121_000G1_scaffold_649_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36484..37233)
DNA (750bp) protein (250aa)
vanYG; M15B family D-Ala-D-Ala carboxypeptidase VanYG (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=3 Tax=Bifidobacterium bifidum RepID=E4V9Y0_BIFBI
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:ERI82405.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98242.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_121_000G1_scaffold_649_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37465..39066
DNA (1602bp) protein (534aa)
ATP-binding protein of ABC transporter system n=7 Tax=Bifidobacterium RepID=E3EQ49_BIFBS
ydiF; ABC transporter ATP-binding protein
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:CDB23232.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_121_000G1_scaffold_649_30
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39477..40499)
DNA (1023bp) protein (341aa)
galE; UDP-glucose 4-epimerase GalE (EC:5.1.3.2)
GalE UDP-glucose 4-epimerase (Leloir pathway) n=3 Tax=Bifidobacterium RepID=E4NX42_BIFBP
GalE UDP-glucose 4-epimerase (Leloir pathway) {ECO:0000313|EMBL:CDB23233.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Displaying items 1-30 of 127 in total

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