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L3_121_000G1_scaffold_8859

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_8859_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..561)
DNA (561bp) protein (187aa)
Efflux ABC transporter, permease protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5E8C1_BIFLI
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EEI81801.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
ABC transporter
L3_121_000G1_scaffold_8859_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(765..2183)
DNA (1419bp) protein (473aa)
Putative membrane protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2HZK3_BIFLN
Membrane protein {ECO:0000313|EMBL:KHD95112.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
hypothetical protein
L3_121_000G1_scaffold_8859_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2457..3173
DNA (717bp) protein (239aa)
Peptidase C26 n=10 Tax=root RepID=I3AR52_BIFLN
Amidotransferase {ECO:0000313|EMBL:KHD95113.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
peptidase
L3_121_000G1_scaffold_8859_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3357..4736)
DNA (1380bp) protein (460aa)
L-arabinose isomerase {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909}; EC=5.3.1.4 {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909};; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
L-arabinose isomerase n=20 Tax=root RepID=ARAA_BIFLD
araA; araa
L3_121_000G1_scaffold_8859_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4844..5554)
DNA (711bp) protein (237aa)
L-ribulose-5-phosphate 4-epimerase n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MRT7_BIFL1
L-ribulose-5-phosphate 4-epimerase
Ribulose 5-phosphate epimerase {ECO:0000313|EMBL:KHD95115.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
L3_121_000G1_scaffold_8859_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5640..7286)
DNA (1647bp) protein (549aa)
Sugar (Pentulose and hexulose) kinases n=9 Tax=Bifidobacterium longum RepID=D6D9Y2_BIFLN
Carbohydrate kinase, FGGY family protein {ECO:0000313|EMBL:EIJ32602.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
Sugar (pentulose and hexulose) kinases
L3_121_000G1_scaffold_8859_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7441..8556)
DNA (1116bp) protein (372aa)
LacI-type transcriptional regulator n=11 Tax=root RepID=Q8G7J0_BIFLO
transcriptional regulator, LacI family
LacI family transcriptional regulator {ECO:0000313|EMBL:KEY23397.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_121_000G1_scaffold_8859_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8683..9300)
DNA (618bp) protein (206aa)
RNase HII (EC:3.1.26.4)
Ribonuclease {ECO:0000256|RuleBase:RU003515}; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
Ribonuclease n=3 Tax=Bifidobacterium RepID=I3B210_BIFLN
L3_121_000G1_scaffold_8859_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9330..10187)
DNA (858bp) protein (286aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZDX3_9ZZZZ
signal peptidase
L3_121_000G1_scaffold_8859_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(10354..10719)
DNA (366bp) protein (122aa)
50S ribosomal protein L19 n=21 Tax=root RepID=B3DTK1_BIFLD
rplS; rpls
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L3_121_000G1_scaffold_8859_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10993..11109)
DNA (117bp) protein (39aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZDX1_9ZZZZ
glucose-6-phosphate isomerase
Displaying 11 items

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