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L3_121_000G1_scaffold_1062

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_1062_1
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(276..2825)
DNA (2550bp) protein (850aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSX4_9FIRM
L3_121_000G1_scaffold_1062_2
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3165..5099)
DNA (1935bp) protein (645aa)
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
DNA gyrase subunit B n=2 Tax=Clostridiales RepID=D4M1B4_9FIRM
L3_121_000G1_scaffold_1062_3
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5111..6202)
DNA (1092bp) protein (364aa)
DNA replication and repair protein RecF n=2 Tax=Clostridiales RepID=D4M1B5_9FIRM
recF protein
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L3_121_000G1_scaffold_1062_4
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6272..6487)
DNA (216bp) protein (72aa)
Uncharacterized conserved protein n=2 Tax=Clostridiales RepID=D4M1B6_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CDC17377.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L3_121_000G1_scaffold_1062_5
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6646..7755)
DNA (1110bp) protein (370aa)
DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
DNA polymerase III subunit beta n=2 Tax=Clostridiales RepID=D4M1B7_9FIRM
L3_121_000G1_scaffold_1062_6
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8110..9480)
DNA (1371bp) protein (457aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P9I1_9FIRM
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
chromosomal replication initiator protein DnaA
L3_121_000G1_scaffold_1062_7
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10394..10729
DNA (336bp) protein (112aa)
ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Ribonuclease P protein component n=2 Tax=Clostridiales RepID=D4M1C0_9FIRM
L3_121_000G1_scaffold_1062_8
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10757..10969
DNA (213bp) protein (71aa)
Putative membrane protein insertion efficiency factor n=2 Tax=Clostridiales RepID=D4M1C1_9FIRM
conserved hypothetical protein TIGR00278
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1062_9
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10982..12316
DNA (1335bp) protein (445aa)
Membrane protein insertase YidC/Oxa1 family C-terminal domain n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NZ20_9FIRM
Membrane protein insertase YidC/Oxa1 family C-terminal domain {ECO:0000313|EMBL:CDC17383.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
membrane protein insertase, YidC/Oxa1 family, C-terminal domain
L3_121_000G1_scaffold_1062_10
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12392..13219
DNA (828bp) protein (276aa)
Predicted RNA-binding protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M1C3_9FIRM
Predicted RNA-binding protein
Predicted RNA-binding protein {ECO:0000313|EMBL:CBL25035.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1062_11
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13450..14838
DNA (1389bp) protein (463aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
tRNA modification GTPase MnmE n=2 Tax=Clostridiales RepID=D4M1C4_9FIRM
tRNA modification GTPase trmE
L3_121_000G1_scaffold_1062_12
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14804..16696
DNA (1893bp) protein (631aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Ruminococcus torques L2-14 RepID=D4M1C5_9FIRM
glucose-inhibited division protein A
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1062_13
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16811..17536
DNA (726bp) protein (242aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.- 2.1.-.-)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q614_9FIRM
L3_121_000G1_scaffold_1062_14
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17786..18754)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NZ25_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC17388.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L3_121_000G1_scaffold_1062_15
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19198..19968
DNA (771bp) protein (257aa)
ATPases involved in chromosome partitioning n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NYL7_9FIRM
ATPases involved in chromosome partitioning {ECO:0000313|EMBL:CDC16275.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
ATPases involved in chromosome partitioning
L3_121_000G1_scaffold_1062_16
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19971..20891
DNA (921bp) protein (307aa)
ParB-like partition proteins n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P6H3_9FIRM
ParB-like partition proteins {ECO:0000313|EMBL:CDC16274.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
ParB-like partition proteins
L3_121_000G1_scaffold_1062_17
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20908..21411
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NVV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC16273.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L3_121_000G1_scaffold_1062_18
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21450..22739
DNA (1290bp) protein (430aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Seryl-tRNA synthetase {ECO:0000313|EMBL:CBL25040.1}; EC=6.1.1.11 {ECO:0000313|EMBL:CBL25040.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Seryl-tRNA synthetase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M1C8_9FIRM
L3_121_000G1_scaffold_1062_19
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22762..23637
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PCI7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC16271.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L3_121_000G1_scaffold_1062_20
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24016..26073
DNA (2058bp) protein (686aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q631_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC17402.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L3_121_000G1_scaffold_1062_21
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26208..27182)
DNA (975bp) protein (325aa)
Predicted Na+-dependent transporter n=1 Tax=Ruminococcus torques L2-14 RepID=D4M1D1_9FIRM
Predicted Na+-dependent transporter
Predicted Na+-dependent transporter {ECO:0000313|EMBL:CBL25043.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1062_22
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27186..28025)
DNA (840bp) protein (280aa)
pantothenate synthetase (EC:6.3.2.1)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000313|EMBL:CBL25044.1}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000313|EMBL:CBL25044.1};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Pantothenate synthetase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M1D2_9FIRM
L3_121_000G1_scaffold_1062_23
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28120..28512)
DNA (393bp) protein (131aa)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L-aspartate 1-decarboxylase (EC:4.1.1.11)
Aspartate 1-decarboxylase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q6S3_9FIRM
L3_121_000G1_scaffold_1062_24
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28898..29716
DNA (819bp) protein (273aa)
Amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) n=1 Tax=Ruminococcus torques L2-14 RepID=D4M1D4_9FIRM
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
Amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CBL25046.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1062_25
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29703..31892
DNA (2190bp) protein (730aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IX93_9CLOT
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CCY41397.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Signal transduction histidine kinase
L3_121_000G1_scaffold_1062_26
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31889..33388
DNA (1500bp) protein (500aa)
Response regulator containing a CheY-like receiver domain and an HD-GYP domain n=1 Tax=Ruminococcus torques L2-14 RepID=D4M1D5_9FIRM
Response regulator containing a CheY-like receiver domain and an HD-GYP domain
Response regulator containing a CheY-like receiver domain and an HD-GYP domain {ECO:0000313|EMBL:CBL25047.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1062_27
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33513..34385)
DNA (873bp) protein (291aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q6X1_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CDC17702.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L3_121_000G1_scaffold_1062_28
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34749..36437
DNA (1689bp) protein (563aa)
Glycosidases (EC:3.2.1.10)
Glycosidases {ECO:0000313|EMBL:CBL25049.1}; EC=3.2.1.10 {ECO:0000313|EMBL:CBL25049.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Glycosidases n=1 Tax=Ruminococcus torques L2-14 RepID=D4M1D7_9FIRM
L3_121_000G1_scaffold_1062_29
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36434..38425
DNA (1992bp) protein (664aa)
Alpha-glucosidases, family 31 of glycosyl hydrolases (EC:3.2.1.20)
Alpha-glucosidases, family 31 of glycosyl hydrolases {ECO:0000313|EMBL:CBL25050.1}; EC=3.2.1.20 {ECO:0000313|EMBL:CBL25050.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Alpha-glucosidases, family 31 of glycosyl hydrolases n=1 Tax=Ruminococcus torques L2-14 RepID=D4M1D8_9FIRM
L3_121_000G1_scaffold_1062_30
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38720..40114
DNA (1395bp) protein (465aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=S2YIM0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG89508.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
hypothetical protein
Displaying items 1-30 of 32 in total

View Taxonomy