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L3_121_000G1_scaffold_1072

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_121_000G1_scaffold_1072_1
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33..1046)
DNA (1014bp) protein (338aa)
Acyltransferase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NXP1_9FIRM
Acyltransferase {ECO:0000313|EMBL:CDC15945.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L3_121_000G1_scaffold_1072_2
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1071..2297)
DNA (1227bp) protein (409aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Nucleotidyltransferase/DNA polymerase involved in DNA repair (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NUV1_9FIRM
L3_121_000G1_scaffold_1072_3
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2721..5306)
DNA (2586bp) protein (862aa)
ATP-dependent chaperone ClpB n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3E6_9FIRM
ATP-dependent chaperone ClpB
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1072_4
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5536..6573
DNA (1038bp) protein (346aa)
Predicted membrane protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3E7_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBL25759.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1072_5
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6705..8087
DNA (1383bp) protein (461aa)
Putative efflux protein MATE family n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q1U0_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CDC15937.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
putative efflux protein, MATE family
L3_121_000G1_scaffold_1072_6
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8168..8581
DNA (414bp) protein (138aa)
Ion channel n=2 Tax=Clostridiales RepID=D4M3E9_9FIRM
Ion channel.
Ion channel {ECO:0000313|EMBL:CDC15934.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L3_121_000G1_scaffold_1072_7
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8586..9878)
DNA (1293bp) protein (431aa)
Chloride channel protein EriC n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3F0_9FIRM
Chloride channel protein EriC
Chloride channel protein EriC {ECO:0000313|EMBL:CBL25762.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1072_8
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9899..10678)
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3F1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL25763.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1072_9
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10876..14970)
DNA (4095bp) protein (1365aa)
Phosphatidylinositol-specific phospholipase C, X domain n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3F3_9FIRM
Phosphatidylinositol-specific phospholipase C, X domain {ECO:0000313|EMBL:CBL25765.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Phosphatidylinositol-specific phospholipase C, X domain.
L3_121_000G1_scaffold_1072_10
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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15173..15892
DNA (720bp) protein (240aa)
Response regulator of the LytR/AlgR family n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3F4_9FIRM
Response regulator of the LytR/AlgR family
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CBL25766.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1072_11
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15892..17211
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P2N8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC17710.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L3_121_000G1_scaffold_1072_12
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17216..18388)
DNA (1173bp) protein (391aa)
Probable hydroxymethylpyrimidine transporter CytX n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3F7_9FIRM
probable hydroxymethylpyrimidine transporter CytX
Probable hydroxymethylpyrimidine transporter CytX {ECO:0000313|EMBL:CBL25769.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1072_13
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18392..19201)
DNA (810bp) protein (270aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:CBL25770.1}; EC=2.7.4.7 {ECO:0000313|EMBL:CBL25770.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Phosphomethylpyrimidine kinase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3F8_9FIRM
L3_121_000G1_scaffold_1072_14
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

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19576..19710
DNA (135bp) protein (45aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5Y169_9FIRM
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:CDA14946.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
L3_121_000G1_scaffold_1072_15
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19771..19962
DNA (192bp) protein (64aa)
Cyclic nucleotide-binding domain n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3F9_9FIRM
Cyclic nucleotide-binding domain.
Cyclic nucleotide-binding domain {ECO:0000313|EMBL:CBL25771.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1072_16
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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19992..22301
DNA (2310bp) protein (770aa)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein {ECO:0000313|EMBL:CBL25772.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CBL25772.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3G0_9FIRM
L3_121_000G1_scaffold_1072_17
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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22294..23181
DNA (888bp) protein (296aa)
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs (EC:1.17.1.4)
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs {ECO:0000313|EMBL:CBL25773.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CBL25773.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3G1_9FIRM
L3_121_000G1_scaffold_1072_18
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23174..23680
DNA (507bp) protein (169aa)
Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P2N4_9FIRM
Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs {ECO:0000313|EMBL:CDC17705.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs
L3_121_000G1_scaffold_1072_19
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23727..23948
DNA (222bp) protein (74aa)
Putative permease n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PAE4_9FIRM
Putative permease {ECO:0000313|EMBL:CDC17704.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
putative xanthine permease
L3_121_000G1_scaffold_1072_20
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24095..24799)
DNA (705bp) protein (235aa)
Haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3H0_9FIRM
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
Haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CBL25782.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1072_21
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25084..25866
DNA (783bp) protein (261aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3H1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL25783.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1072_22
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26137..26883)
DNA (747bp) protein (249aa)
Predicted permeases n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3H2_9FIRM
Predicted permeases
Predicted permeases {ECO:0000313|EMBL:CBL25784.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_121_000G1_scaffold_1072_23
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26978..27247)
DNA (270bp) protein (90aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R6PZJ5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC15122.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L3_121_000G1_scaffold_1072_24
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27285..27626)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CEV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31572.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ATP-binding region, ATPase-like protein
L3_121_000G1_scaffold_1072_25
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27664..28170)
DNA (507bp) protein (169aa)
Conserved protein/domain typically associated with flavoprotein oxygenases DIM6/NTAB family n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P9A9_9FIRM
Conserved protein/domain typically associated with flavoprotein oxygenases DIM6/NTAB family {ECO:0000313|EMBL:CDC15126.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L3_121_000G1_scaffold_1072_26
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28260..29483)
DNA (1224bp) protein (408aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Tyrosine--tRNA ligase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3H5_9FIRM
L3_121_000G1_scaffold_1072_27
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30241..31704)
DNA (1464bp) protein (488aa)
PTS system N-acetylglucosamine-specific IIB component Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component Glc family (TC 4.A.1.1.2) n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NVA0_9FIRM
PTS system N-acetylglucosamine-specific IIB component Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component Glc family (TC 4.A.1.1.2) {ECO:0000313|EMBL:CDC15130.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)
L3_121_000G1_scaffold_1072_28
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31917..32762)
DNA (846bp) protein (282aa)
Transcriptional antiterminator BglG family n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PZK3_9FIRM
Transcriptional antiterminator BglG family {ECO:0000313|EMBL:CDC15132.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
transcriptional antiterminator, BglG family
L3_121_000G1_scaffold_1072_29
unknown

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comp(32999..33151)
DNA (153bp) protein (51aa)

This feature has no annotations

L3_121_000G1_scaffold_1072_30
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33171..33923)
DNA (753bp) protein (251aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSJ1_9FIRM
Displaying items 1-30 of 36 in total

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